Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36330 64 / 2e-11 Uncharacterised protein family (UPF0497) (.1) AT5G40300 63 / 3e-11 Uncharacterised protein family (UPF0497) (.1) AT5G62820 45 / 3e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014537 [exp] 281 / 4e-88 AT3G16180 174 / 4e-49 Major facilitator superfamily protein (.1) Lus10002372 [exp] 53 / 1e-07 AT2G36330 224 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Lus10042123 [exp] 52 / 3e-07 AT2G36330 228 / 2e-73 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G079800 [exp] 62 / 6e-11 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.015G075100 [exp] 58 / 2e-09 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10032148 pacid=23161296 polypeptide=Lus10032148 locus=Lus10032148.g ID=Lus10032148.BGIv1.0 annot-version=v1.0 ATGGAACCCCATGAACAGAAACCCCACCATCTCCCGCCGGTGGAGGAGGAGAAGCAAAAGGAAGCAGAGGCAGCCGGTCACTATGACTTCGATTCTTCTT CTCCCGAATCATCTCCAGATTACAAACCAGATTCGATTCAGCAACTTGAAGAAGAACACAACATCTCCACTTCACCTCCGCCGCAGCCGCCGCCTGAGAA AAGGGACGACGAAGGTCACTACGAATTCGAATCATCTCCAGAGCCCGAATTCATCCAGCTTCCGCATCGTCATCAACAACAGCCGCCGGAATCAGAAGAA ATAGCACACAACAATAACCACAACATCGCTCATCCGCCGCCGCCCTCCGTCACAGTCCAATACTCTTCTCCTCCTCGTCTTCTACCTCCGCCGCAGAAAG ATTCTTCTTATCGAATCCGGAAAGCGCTAGATGAATCCTCGTCCCCTGAATCCCGGGCGCCTACACACGATGCCGCCACTTCCGCCGTCGGCAGAGAAGA GGAATTCAGCGGCGACGGCGGTGGCGGGAGGAGGAAAGTACCGAGACCTAATTTGTCAATACTGAGAAAAGTGAAGTCTGAGAAGATTAGGAGGAGGAGT CTGATTGGTTGCAGGAGCTGTGGATTGGCGTTGTGCTTGGTTTCCCTCTCTGTTTTGGCTGCCGATAAGGATCAAGGCTGGGCTCTCGACTCTTTCTACC GTTACAGAGAATTCAGGTCATCTCTTGAATCCATGAATTTTGATCAAAATCATATCTTGGATTTGTTGATTTTAGAATTTGAGTTCAATTTCGGTGCCCC TGCTTGCAGGTATTGCTTGACGGTGAATGTGATAGGGTTTATGTACTCAAGCCTGCAATTAGCTGATGTTGCCTACACGTTGATAAAAGGAGATGTGAAT CCGGCGAGGAACCGCCGCCGGGATTGCTTTGATTTCTCTGTCGATCAGGCAAGCTCAAATCTTTCTCTCTTTTAA
AA sequence Show only first row Show all	>Lus10032148 pacid=23161296 polypeptide=Lus10032148 locus=Lus10032148.g ID=Lus10032148.BGIv1.0 annot-version=v1.0 MEPHEQKPHHLPPVEEEKQKEAEAAGHYDFDSSSPESSPDYKPDSIQQLEEEHNISTSPPPQPPPEKRDDEGHYEFESSPEPEFIQLPHRHQQQPPESEE IAHNNNHNIAHPPPPSVTVQYSSPPRLLPPPQKDSSYRIRKALDESSSPESRAPTHDAATSAVGREEEFSGDGGGGRRKVPRPNLSILRKVKSEKIRRRS LIGCRSCGLALCLVSLSVLAADKDQGWALDSFYRYREFRSSLESMNFDQNHILDLLILEFEFNFGAPACRYCLTVNVIGFMYSSLQLADVAYTLIKGDVN PARNRRRDCFDFSVDQASSNLSLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	0	1
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	1.0	0.9270
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	3.5	0.9211
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	3.9	0.8969
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	6.7	0.9211
AT1G21370			unknown protein		Lus10029764 [exp]	7.7	0.8973
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	7.7	0.8941
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	8.3	0.8679
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	8.4	0.8835
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	9.4	0.8681
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	10.2	0.8919

Compare expression of checked genes

Lus10032148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.