Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40280 458 / 7e-159 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) AT3G12070 106 / 1e-25 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT2G39550 98 / 4e-22 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT5G12210 97 / 5e-22 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014536 [exp] 727 / 0 AT5G40280 422 / 1e-144 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10039714 [exp] 106 / 2e-25 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10018502 [exp] 105 / 3e-25 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10040303 [exp] 67 / 9e-12 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 49 / 4e-06 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073200 [exp] 542 / 0 AT5G40280 511 / 5e-180 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.013G012500 [exp] 108 / 2e-26 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.008G054500 [exp] 98 / 2e-22 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.010G206001 [exp] 0 / 1 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10032149 pacid=23161309 polypeptide=Lus10032149 locus=Lus10032149.g ID=Lus10032149.BGIv1.0 annot-version=v1.0 ATGGCGATGCCGACGAAGAGCCAGATTGACCAGTGGCGTGTTGAAGAAGTCGTCTTTAAGATTTACGACCAGTTCGCTTACAGAGTTCCTCCTAGAGATC GAATTGCCCACTTCAAACTTCGACGCGATAAACACGTCGAGTATCTCACCAAAGGTCTCCAGCAGCTCAACCCTACCTTCGCTGTCTTGGACGCAAGTCG ACCGTGGCTTTGCTATTGGATCTTGCACTCACTTGCTTTACTTGGAGAGTCAATTGATGATGAACTAGAGGATAACGCCATCGACTTCCTTAGCCGCTGT CAGATGCCTCATCTACTAACAACTTATGCTGCAGTCAATGCGCTTGTCACTTTGGGTGGACATAAAGCCTTGTCGTCAATTAATAGAGATAAAGTCTATC GGTTCTTAAAGAAAATGAAAGACTCGAGTGGTGCCTTCAGGATGCATGATGGTGGGGAAATTGATGTGAGGGCTTGCTATGGTGCAATATCGGTTGCGAG TATTCTGAACATCCTGGATGATGAACTGATCAACGGTGTTGGAGATTACATCTTAAGTTCTCAGACTTATGAAGGTGGTATTGGTGGAGAACCTGGCTCT GAAGCTCACGGAGGGTATACATTCTGTGGATTGGCTGCTATGATTCTCATCAATGAGGCTAATCGTTTGGACTTTGCTCGTTTGATTGATTGGGCGACAT TTCGACAAGGAATAGAATGTGGATTTCAAGGCAGAACAAATAAATTGGTTGATGGTTGTTACTCCTTTTGGCAGTGTATAGTAGTGAACCTTACACTTCA TTGTGGAGAACTCATGAAGGAACTTGATCAGGGAGGTTTATTTGCACTATTGCAAAGAGTACAGTCATTTACTGGGGAAGGAAATCCATCCTCAGACGTA GAAGTAGAATGGGTCACCGATGGTAGTTCAGAGGAGGAAGAAGAAGAAGATGAAGATGGGGATTCGTCGGAAGATCACGAAACTTTCCATCCCGAGGAAA AAGGCGAGAGCAGCAGAAGTGTTCCACGTCAGCATTCGACATATGATGATATGGCAGAACCTCTCTTCAACAGTATAGGTTTGCAGCAGTACATACTCCT ATGCGCACAGATGCTGGAGAATGAGGAAGGAGGGTTGAGAGACAAACCAGGGAAGGGGTGCGACTACTACCATACTTGCTACTGTCTAAGCGGGCTGTCT GTATGTCAGTACAGCCGGTCAAAAGACGAGAACTCTCCACCATTGCCGAGCTCTGTGTTGGGACCTTATTCTAACCTCTTGGAGCCTACGCATCCCGTCT ACAATGTAGTCATGAGGCAGTACCATGAAGCTCGAGACTTCTTCTCTAATTCTTAA
AA sequence Show only first row Show all	>Lus10032149 pacid=23161309 polypeptide=Lus10032149 locus=Lus10032149.g ID=Lus10032149.BGIv1.0 annot-version=v1.0 MAMPTKSQIDQWRVEEVVFKIYDQFAYRVPPRDRIAHFKLRRDKHVEYLTKGLQQLNPTFAVLDASRPWLCYWILHSLALLGESIDDELEDNAIDFLSRC QMPHLLTTYAAVNALVTLGGHKALSSINRDKVYRFLKKMKDSSGAFRMHDGGEIDVRACYGAISVASILNILDDELINGVGDYILSSQTYEGGIGGEPGS EAHGGYTFCGLAAMILINEANRLDFARLIDWATFRQGIECGFQGRTNKLVDGCYSFWQCIVVNLTLHCGELMKELDQGGLFALLQRVQSFTGEGNPSSDV EVEWVTDGSSEEEEEEDEDGDSSEDHETFHPEEKGESSRSVPRQHSTYDDMAEPLFNSIGLQQYILLCAQMLENEEGGLRDKPGKGCDYYHTCYCLSGLS VCQYSRSKDENSPPLPSSVLGPYSNLLEPTHPVYNVVMRQYHEARDFFSNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10032149 [exp]	0	1
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	10.4	0.7687
AT1G17750		AtPEPR2	PEP1 receptor 2 (.1)		Lus10032945 [exp]	54.3	0.6914
AT1G12650			unknown protein		Lus10020336 [exp]	75.2	0.7168
AT4G14180		ATPRD1	putative recombination initiat...		Lus10003912 [exp]	82.0	0.7318
					Lus10022574 [exp]	82.6	0.6848
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10024867 [exp]	140.1	0.7000
AT3G50160			Plant protein of unknown funct...		Lus10038339 [exp]	157.6	0.6899
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10002867 [exp]	177.1	0.7044
AT5G26250			Major facilitator superfamily ...		Lus10005870 [exp]	185.8	0.6898
					Lus10004065 [exp]	202.5	0.6928

Compare expression of checked genes

Lus10032149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.