Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14780 607 / 0 FDH formate dehydrogenase (.1) AT1G17745 116 / 2e-28 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 108 / 1e-25 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT2G45630 104 / 6e-25 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G72190 104 / 7e-25 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT3G19480 102 / 1e-23 D-3-phosphoglycerate dehydrogenase (.1) AT1G12550 96 / 3e-22 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 94 / 2e-21 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G68010 57 / 1e-08 ATHPR1, HPR hydroxypyruvate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014535 [exp] 704 / 0 AT5G14780 607 / 0.0 formate dehydrogenase (.1) Lus10027868 [exp] 117 / 1e-28 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 115 / 9e-28 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 114 / 1e-27 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10041393 [exp] 103 / 1e-24 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 102 / 2e-24 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035758 [exp] 101 / 4e-23 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037552 [exp] 96 / 6e-22 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 95 / 8e-22 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161300 [exp] 645 / 0 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.014G022800 [exp] 119 / 3e-29 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 119 / 3e-29 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.010G249600 [exp] 114 / 1e-27 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.002G151200 [exp] 109 / 5e-27 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G300900 [exp] 111 / 2e-26 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.009G096600 [exp] 110 / 2e-26 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 110 / 5e-26 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.014G073400 [exp] 105 / 3e-25 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G104200 [exp] 105 / 3e-25 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10032150 pacid=23161210 polypeptide=Lus10032150 locus=Lus10032150.g ID=Lus10032150.BGIv1.0 annot-version=v1.0 ATGGCGATGATCGCTACCCTGAAGCGAGCTGCTACTTCTGCCACCCGCGCTTTTGCTTCCTCCTCCTCTGGATCTCTCTCCAGACACCTCCACGCTTCTG CTGGGAGCAAGAAGATCGTCGGAGTGTTCTACAAGGCCAATGAGTACGCTGAGAAGAACCCCAATTTCCTCGGTTGCGCCGAGCACGCTTTGGGCATTCG CGACTGGCTTGAATCTCAAGGCCACCACTACATCGTCACCGACGACAAAGACGGTCCTAACTCCGAGCTGGAGAAGCACATCCCCGATCTTCACGTTCTC ATATCCACACCATTCCATCCCGCCTACGTCACCGCCGAGCGGATAAAAAAGGCCAAGAATTTGCAGCTCCTTCTCACCGCCGGAATCGGATCCGATCACA TCGATCTGCCGGCGGCGGCTGCCGCCGGGTTGACCGTTGCGGAGGTCACCGGAAGCAATGTGGTTTCGGTGGCTGAGGATGAGCTCATGAGGATTCTTAT CCTGATGAGGAACTTCTTGCCTGGCCATCACCAGGTGATCAAGGGAGAATGGGATGTTGCTGGTATAGCTTACAGGGCTTATGATCTTGAAGGGAAGACT ATTGGTACCGTTGGCTGTGGAAGGATTGGGAAGCTTTTGCTCCAGAGGCTCAAACCTTTTGGCTGCAATCTGCTTTATCATGACCGGCTGAAAATGGAGC CGGAGCTCGAGACTCAGATTGGAGCTAAGTTTGAGGAGGATGTTGATGCCATGCTTCCCAAGTGTGATGTGGTTGTCATCAACACTCCGCTAACTGAGAA GACCAAGGGAATGTTTGACAAAGAAAGGATTTCCAAGATGAAGAAAGGAGTACTGATCGTGAACAATGCTCGAGGGGCGATTATGGATACACAAGCAGTT GTTGATGCTTGCTCCAGTGGACATATTGGAGGTTATAGTGGGGATGTTTGGTATCCGCAGCCGGCACCAAAGGACCATCCATGGCGATACATGCCGAACC AGGCGATGACTCCACATATATCTGGCACCACTATTGATGCACAACTGAGGTATGCTGCTGGAGTGAAGGACATGCTGGATAGATACTTCAAGGGAGAAGA TTTCCCACCGCAGCATTACATAGTCAAGGAAGGCAAGTTGGCAAGCCAGTAA
AA sequence Show only first row Show all	>Lus10032150 pacid=23161210 polypeptide=Lus10032150 locus=Lus10032150.g ID=Lus10032150.BGIv1.0 annot-version=v1.0 MAMIATLKRAATSATRAFASSSSGSLSRHLHASAGSKKIVGVFYKANEYAEKNPNFLGCAEHALGIRDWLESQGHHYIVTDDKDGPNSELEKHIPDLHVL ISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFLPGHHQVIKGEWDVAGIAYRAYDLEGKT IGTVGCGRIGKLLLQRLKPFGCNLLYHDRLKMEPELETQIGAKFEEDVDAMLPKCDVVVINTPLTEKTKGMFDKERISKMKKGVLIVNNARGAIMDTQAV VDACSSGHIGGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPPQHYIVKEGKLASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10032150 [exp]	0	1
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	2.8	0.9874
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	4.7	0.9800
					Lus10003173 [exp]	6.6	0.9797
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	10.9	0.9654
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	14.9	0.9798
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	15.7	0.9797
					Lus10043316 [exp]	17.0	0.9785
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	18.7	0.9746
					Lus10002336 [exp]	20.2	0.9734
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10042593 [exp]	20.5	0.9737

Compare expression of checked genes

Lus10032150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.