Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01480 508 / 1e-180 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) AT3G15520 109 / 3e-26 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014534 [exp] 673 / 0 AT3G01480 639 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Lus10038601 [exp] 102 / 1e-23 AT3G15520 597 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10037891 [exp] 89 / 3e-19 AT3G15520 508 / 5e-180 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 40 / 0.0007 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 40 / 0.001 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072800 [exp] 531 / 0 AT3G01480 665 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Potri.001G351400 [exp] 530 / 0 AT3G01480 666 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Potri.001G404700 [exp] 104 / 2e-24 AT3G15520 612 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10032151 pacid=23161113 polypeptide=Lus10032151 locus=Lus10032151.g ID=Lus10032151.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCAGCAGCAGCAGCAGCAGGAGCTTCAATCCGTTGGCATTATTCCACCACTTCATCTTCCTCCCATTACAGTCTAAACACCAAATCGCCCA CAACTCACATTGCCATTCCTAAACGTCTAGCTCGAGTCTCCTGTTCACTCAATAGTCGTCCAACCCAGGGGAGAACAGAGAAGAAGTCGTTTTCGTTCAA GGAGTGTGCGATTTCGGTTGCGTTGGCAGTCGGGTTAGTTACCGGAATGCCATCGCTGGAGAATTTGGGTCCTCCCAATGCGAATGCTGTGTTGATATCG GGACCTCCGATCAAAGACCCTGGAGCTTTGCTAAGGTATGCACTGCCGATAGACAATAAAGCCATAAGGGAAGTCCAGAAGCCACTTGAGGATATTACTG ATAGTCTCAAGATTGCTGGACTCAAAGCTCTTGATTCCGTTGAAAGAAATGTGAGGCAGGCATCTCGAGCTCTACAGCAAGGGAAAAGTTTGATTCTTGC TGGCTTGGCTGAGCCAAAGAGGCCCGGAGGAGTAGAGTTACTTGACAAGTTGGAAACTGGACTGAGTGAGCTTCAGATGATTGTGGAGAGCAGGAATAGA GATGCTGTTGCTCCGAAACAAAGGGAGCTGCTTGATTATGTCGGAAGTGTTGAAGAGGACATGGTGAATGGATTCCCTTACGAAGTCCCTGAAGAATACA GAACAATGCCTCTCTTGAAAGGTAGAGCAACTGTGGACATGAAGGTCAAGGTCAAAGACAATCCCAATCTCGAGGACTGTGTCTTCCGCATTGTCCTCGA CGGCTACAATGCTCCGGTAACCGCTGGAAACTTCGTGGACTTGGTCCAGAGGCACTTCTATGATGGCATGCAGATTCAAAGAGCCGATGGCTTTGTTGTT CAAACTGGCGATCCAGAAGGTCCAGCTGAGGGATTCATTGATCCTAGCACGGAGAAGACTCGAACCATTCCATTGGAAATCATGGCGGATGGAGAGAAAG AGCCTTTCTACGGTGCAACTCTTGAAGAGCTTGGTCTATACAAGGCCCAAACGAAGCTTCCATTCAATGCATTTGGGACGATGGCAATGGCCAGAGATGT GAGGAAGTCTGAGACTCTTTTTTCATTAAAGTGA
AA sequence Show only first row Show all	>Lus10032151 pacid=23161113 polypeptide=Lus10032151 locus=Lus10032151.g ID=Lus10032151.BGIv1.0 annot-version=v1.0 MAAAAAAAAGASIRWHYSTTSSSSHYSLNTKSPTTHIAIPKRLARVSCSLNSRPTQGRTEKKSFSFKECAISVALAVGLVTGMPSLENLGPPNANAVLIS GPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKIAGLKALDSVERNVRQASRALQQGKSLILAGLAEPKRPGGVELLDKLETGLSELQMIVESRNR DAVAPKQRELLDYVGSVEEDMVNGFPYEVPEEYRTMPLLKGRATVDMKVKVKDNPNLEDCVFRIVLDGYNAPVTAGNFVDLVQRHFYDGMQIQRADGFVV QTGDPEGPAEGFIDPSTEKTRTIPLEIMADGEKEPFYGATLEELGLYKAQTKLPFNAFGTMAMARDVRKSETLFSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	0	1
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	1.4	0.9507
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	1.4	0.9630
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	4.1	0.9272
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10012268 [exp]	4.5	0.9350
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	4.5	0.9453
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	4.5	0.9434
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10023202 [exp]	4.7	0.9336
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	5.1	0.9326
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	5.2	0.9457
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	6.7	0.9351

Compare expression of checked genes

Lus10032151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.