Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14790 261 / 2e-85 ARM repeat superfamily protein (.1) AT3G01450 251 / 7e-82 ARM repeat superfamily protein (.1) AT4G15830 157 / 7e-46 ARM repeat superfamily protein (.1) AT3G18530 0 / 1 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014533 [exp] 477 / 3e-170 AT5G14790 323 / 2e-109 ARM repeat superfamily protein (.1) Lus10034168 [exp] 161 / 6e-47 AT4G15830 290 / 5e-98 ARM repeat superfamily protein (.1) Lus10043416 [exp] 151 / 2e-43 AT4G15830 291 / 2e-98 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221900 [exp] 176 / 2e-53 AT4G15830 293 / 2e-99 ARM repeat superfamily protein (.1) Potri.010G014200 [exp] 172 / 1e-51 AT4G15830 309 / 1e-105 ARM repeat superfamily protein (.1) Potri.008G221700 [exp] 158 / 5e-46 AT4G15830 318 / 5e-109 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12348 [flax] [poplar] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Lus10032152 pacid=23161181 polypeptide=Lus10032152 locus=Lus10032152.g ID=Lus10032152.BGIv1.0 annot-version=v1.0 ATGTCAGAGGCGGGCTGCATGGATATCAAGATATTGCCTGAAAATGGCAGTAGTGGGTGCTCCAGTATAGGAGCCATCGACAAAAATTGCAATGGGAATG CTGTTAGTAATGTTGAAGAGCACCCAAAAAATACCATTTCCTCTAAGGTTTCGGCTGTTAATGGGACTTCGAGTGTCAATTCTGAATCAGAGACTGTAAG TTCAGAGGTTACGGAGGTGGAGTACATTGAATCTGAGAATTTGTCTGATGTGGAGGATGTTGATGTTTGCGTGAAGGATCTTTTAGTCGGACTTCAATCA AAAGATTGGGTTCTAGTTTGTGAATCACTTAACAATACACGCCGGTTATCAATTTTTCACAAGGAGAAATTGCTGGATATGCTGGATGATGTGATTCCTC TGCTAGTCAAGTGCTTGAAGAATCCAAGGAGTGCTGTTTGCAAAACCACGATTATGACTTGCGGAGACATATTCATCACGTACAATGATCACATAGTCGA TTCTCTGGATCCTTTGCTGTTACAACTTCTCCTCAAGTCTTCACAAGATAAAAGATTTGTTTGCGAGGCAGCTGAAAAAGCACTGATGGCATTGACAACT TCAGTTTCTCCAACGCTGCTGCTGCCAAAGCTGCAGCCTCATCTCTACAGCAAAAACCCTCGAATTCGAGCCAAGGCATCTATCTTCTTCTGCAGGAGTG TTCCAAGATTGGGTACCGAAGGAATTTCAGTGTACGGAATTGACAAGTTGGTCGAAATTGCTGCTCGTCAACTCAGTGACAAACTTCCAGAGTCGAGAGA AGCTGCTCGAATCCTGCTTACGGAGCTTAAAACTGCATACGAGAAGTCATTAGTACCTGAAGATCCGGAACCGATCTCTTGGGAGCAGTTCTGTTCTTCG AAATTTCCTCCAACAACCACACAAGCGGTGCTCCGTGTCACAGGTACTGGTCGAGGCAGTCTCGTCCAGAGTTCTTGA
AA sequence Show only first row Show all	>Lus10032152 pacid=23161181 polypeptide=Lus10032152 locus=Lus10032152.g ID=Lus10032152.BGIv1.0 annot-version=v1.0 MSEAGCMDIKILPENGSSGCSSIGAIDKNCNGNAVSNVEEHPKNTISSKVSAVNGTSSVNSESETVSSEVTEVEYIESENLSDVEDVDVCVKDLLVGLQS KDWVLVCESLNNTRRLSIFHKEKLLDMLDDVIPLLVKCLKNPRSAVCKTTIMTCGDIFITYNDHIVDSLDPLLLQLLLKSSQDKRFVCEAAEKALMALTT SVSPTLLLPKLQPHLYSKNPRIRAKASIFFCRSVPRLGTEGISVYGIDKLVEIAARQLSDKLPESREAARILLTELKTAYEKSLVPEDPEPISWEQFCSS KFPPTTTQAVLRVTGTGRGSLVQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14790			ARM repeat superfamily protein...		Lus10032152 [exp]	0	1
AT2G46000			unknown protein		Lus10018829 [exp]	6.3	0.8623
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	12.5	0.8605
AT3G16200			unknown protein		Lus10037579 [exp]	15.2	0.8438
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	15.4	0.8562
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015334 [exp]	16.4	0.7177
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	18.5	0.8180
AT5G27490			Integral membrane Yip1 family ...		Lus10029935 [exp]	18.5	0.8523
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	21.6	0.8348
AT2G34590			Transketolase family protein (...		Lus10038505 [exp]	26.3	0.8105
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	30.5	0.7836

Compare expression of checked genes

Lus10032152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.