Plant FIBer expression Database

Lus10032153 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23850 47 / 3e-06 unknown protein
AT1G23840 45 / 2e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014532
[exp]
172 / 3e-53 AT1G23850 78 / 2e-16 unknown protein
Lus10039417
[exp]
57 / 1e-09 ND 37 / 7e-06
Lus10030860
[exp]
52 / 1e-07 AT1G23850 157 / 4e-45 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G262900
[exp]
57 / 1e-09 AT1G23840 103 / 2e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10032153 pacid=23161180 polypeptide=Lus10032153 locus=Lus10032153.g ID=Lus10032153.BGIv1.0 annot-version=v1.0
ATGGAGAACACCCAAATCACTTCAAAAGACAAGCTAGAATTCCTCGACATAATCAAGGAATCTCGGAACTTAACATCCCAAACCCCACTCTTCATTTCCC
TCTCCTTGCTAACTTCCTTCCCTGCATTTCTCTTCTCCCTCTGGCAACAACTTCTCCTCCAACAACTCTTCCACGGAGCAGCCGATTTAGCTGCAGATCC
CGAGCTCGCATTCGATCCATGGTTCGCTTCAGACTACACAATCACTTTCATCCAACACTTCTCCCCAACATTCATCCTCTTATCCTCCTCATACCCCACA
TTAGGCCATTTTCTCAATGTCATCAACACCATAGCCATAGCTCATCCAGCATTAACGATATACGCAGGGAAGAAGCCAGAAGGAGAATGTATCAGTAGAG
GATGTGGGAACAGAGGGTTTCTTCTGATGCTGGGTTTCCTTGTTTGGAGAGTTGTTCTGAAGGTGGGTTTCTGGAACTATGGATTTTTCCTGGAATCATC
TGGATATTATATAGTGCTTGTTGGAGAAGGTGCATTGGCTTGGTTTGGGGAAATGATGAATTGGGTTGTTTGTACTGTTTATTACTATGACTGTAGATGT
AGGTTTCTCGAGAAGAAAGTTGATTTGGAGAGGCAAAGAGGAGCAGATATAGTAATTACTACCTTATGA
AA sequence
>Lus10032153 pacid=23161180 polypeptide=Lus10032153 locus=Lus10032153.g ID=Lus10032153.BGIv1.0 annot-version=v1.0
MENTQITSKDKLEFLDIIKESRNLTSQTPLFISLSLLTSFPAFLFSLWQQLLLQQLFHGAADLAADPELAFDPWFASDYTITFIQHFSPTFILLSSSYPT
LGHFLNVINTIAIAHPALTIYAGKKPEGECISRGCGNRGFLLMLGFLVWRVVLKVGFWNYGFFLESSGYYIVLVGEGALAWFGEMMNWVVCTVYYYDCRC
RFLEKKVDLERQRGADIVITTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23850 unknown protein Lus10032153
[exp]
0 1
AT4G37445 unknown protein Lus10001408
[exp]
4.2 0.9551
AT1G35470 SPla/RYanodine receptor (SPRY)... Lus10006084
[exp]
5.5 0.9415
Lus10002859
[exp]
7.1 0.9526
AT3G54980 Pentatricopeptide repeat (PPR)... Lus10043366
[exp]
8.4 0.8749
AT3G04030 GARP Homeodomain-like superfamily p... Lus10020264
[exp]
10.0 0.9413
Lus10035048
[exp]
11.7 0.9394
AT4G16400 unknown protein Lus10038791
[exp]
12.0 0.9408
AT3G48200 unknown protein Lus10008827
[exp]
12.4 0.8694
AT1G54400 HSP20-like chaperones superfam... Lus10013655
[exp]
12.8 0.9241
AT2G23970 Class I glutamine amidotransfe... Lus10019964
[exp]
13.0 0.9388

Lus10032153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.