Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 79 / 3e-16 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G01580 76 / 6e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 75 / 1e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 59 / 3e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 46 / 3e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G60140 41 / 0.0009 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014528 [exp] 483 / 6e-171 AT3G18990 95 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023843 [exp] 204 / 7e-62 AT3G18990 81 / 9e-17 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021007 [exp] 172 / 9e-51 AT3G18990 87 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10019977 [exp] 153 / 2e-45 AT3G18990 41 / 7e-05 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10040408 [exp] 127 / 2e-35 ND 41 / 8e-05 Lus10000160 [exp] 97 / 2e-24 ND / Lus10015505 [exp] 95 / 2e-21 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2) Lus10023844 [exp] 84 / 2e-18 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 85 / 3e-18 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 97 / 4e-22 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 85 / 5e-18 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G230100 [exp] 82 / 1e-16 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 78 / 1e-15 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 76 / 1e-15 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 67 / 8e-13 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 68 / 3e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 67 / 6e-12 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 51 / 7e-07 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 50 / 1e-06 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032159 pacid=23161310 polypeptide=Lus10032159 locus=Lus10032159.g ID=Lus10032159.BGIv1.0 annot-version=v1.0 ATGGCTGTGAACGATCTATCCAAGCATTTCTGGCAGATTATCTACCCTGAAGACCTCAAGCAAGGCAGATTGAGGATTTCGGAGGAGTTTGTGAAGGAGT ACGGCCACCTCCTCTCCGACGAGGTGATGCTGAAAGTACCGGACGGGAAAGTTTGGAAGATCGGGCTGGCAAAGCAAATTGGCTGCCGTAAAGAGAGAAT CTGGCTCAAAGCTGGATTCTGTCGTTTCCTTGAGTACTACTCCATTGATGCTGGTTATCTTCTCACATTCGAGTTCGGAGGCTCGTCCAGGTTTCAGGCC TTGGTTTTCGACTCCCCCGCCTGCGAGATCGTCTACCCAATCTCCTCCTCCCCTGATTCCGATTCAGATTCGGATTCCGATTCCGATTTCGACTTCGACG AGCCTTGTTTCAGGCACGGAAACAGAGGAAAAGGAGTTGTTGCCGCTGCCGCCGGGAAAAATGGCGGCAATGCATCAAGCTCACAGAAGAAACAGAAACA GGAACAACCTCGTCAGTATTTTCCGGACCTTGATATCGATGATTCCGACTCAGATTCCTCCGACTCCGATCCGGACTTCTGCAGCCCTGATTTCAGGGGC AGAAACAGAGGAAAGCAAGTTGCCCCCGCCAAGAACAACGGCGGCAATGCATCAAGCTCACGACCTCCCAATGCCGCCGGAGCATCCTTCACTAATGCAG AGGAGTTATGGAGCCGACTCGAGAAATCAACTATAATCAAAACTAAGGGGTTCAACTCCAGGCTGATGAAGCTCCCTGAAGCAAGCCAGAGAGCAATCAG TAGAGCCTTTGATATTAGCAATCCGAAGAACCCTTCGTTTCTGGTAGACATCACGACATCCCAAGCAAACTCAGGAAACATGAACTTGCCGATAAGGATC ACAGCTGATGGCTACATGAGGGAAGATTTACAGAAGATGACGATGCGTGTGTTCGATGGAGAGGAGGAGATTATGGTGGACGAGAGGGAGGTTAATCTGT TCGAGAGGAAGGGGAAACAATATGGGGGGAAGAAGTATATATGCGGGTGGATATCGTTCTGCAAGGACCATAGGTTGGTAAATGGAGACGTGTGTCTGTT CGAGCTTGTCAAGCCCCAGACTAACGTTTTCAACGTTCGCAAATTCCATGCTGGTTGCGGTTGA
AA sequence Show only first row Show all	>Lus10032159 pacid=23161310 polypeptide=Lus10032159 locus=Lus10032159.g ID=Lus10032159.BGIv1.0 annot-version=v1.0 MAVNDLSKHFWQIIYPEDLKQGRLRISEEFVKEYGHLLSDEVMLKVPDGKVWKIGLAKQIGCRKERIWLKAGFCRFLEYYSIDAGYLLTFEFGGSSRFQA LVFDSPACEIVYPISSSPDSDSDSDSDSDFDFDEPCFRHGNRGKGVVAAAAGKNGGNASSSQKKQKQEQPRQYFPDLDIDDSDSDSSDSDPDFCSPDFRG RNRGKQVAPAKNNGGNASSSRPPNAAGASFTNAEELWSRLEKSTIIKTKGFNSRLMKLPEASQRAISRAFDISNPKNPSFLVDITTSQANSGNMNLPIRI TADGYMREDLQKMTMRVFDGEEEIMVDEREVNLFERKGKQYGGKKYICGWISFCKDHRLVNGDVCLFELVKPQTNVFNVRKFHAGCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10032159 [exp]	0	1
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	1.7	0.8232
AT1G12630	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027413 [exp]	8.1	0.8223
AT2G23440			unknown protein		Lus10002969 [exp]	9.0	0.8152
AT5G19730			Pectin lyase-like superfamily ...		Lus10009997 [exp]	9.2	0.7753
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10039173 [exp]	10.6	0.7564
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	10.8	0.8062
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	11.4	0.7955
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	13.6	0.7925
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	14.5	0.7916
					Lus10005752 [exp]	18.8	0.7480

Compare expression of checked genes

Lus10032159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.