Plant FIBer expression Database

Lus10032160 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01430 49 / 3e-07 unknown protein
AT5G14890 49 / 4e-07 NHL domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014527
[exp]
0 / 1 AT3G01430 54 / 2e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G101300
[exp]
74 / 4e-17 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1)
Potri.001G132100
[exp]
69 / 6e-15 AT3G01430 122 / 7e-36 unknown protein
PFAM info
Representative CDS sequence
>Lus10032160 pacid=23161321 polypeptide=Lus10032160 locus=Lus10032160.g ID=Lus10032160.BGIv1.0 annot-version=v1.0
ATGTCCCAACCTCCACGCGCCGTCCCTTTCTACGACGACGACGACATTCACGATCCCGCCTTCGCCAGGCGCGGCTGCTTCCTCCTCAGGCGCGGCTGCT
GCTGCTTCTTCTTCCCCAACCTCCTGGGCAAGAAACACCCAAGAGGAGGAGGGGCGGCGGGGTCATCCGCCGCGTTCTGGCAGCGGATCAGGCCTAGAAC
CCCCGATCAGTCACTGCCGTGGCGGCGGGGGGGGGGGAAGAAGGTCAGCGGTCTGTCGGAGGTCGGGGATGGTCCGAGGTGGAAGAGGCTGATTCGGAGG
TTTAATATCAGGAGGAAGAGGAGAGGATATGGGAAATTCCACTACGACGCTACCAGCTACGCTCTCAATTTCGACGATGGCCCCTTGGACGGCCGCGATT
CCTACTACCACGATGAGGATCTCCACGGCAGGGGATTCTCCGATCACTATTCTCTCCCGCCGTCGGCGAAATGTTCCATGGATTTCGATCATGATTTAAA
TTTCAGCTCGTGA
AA sequence
>Lus10032160 pacid=23161321 polypeptide=Lus10032160 locus=Lus10032160.g ID=Lus10032160.BGIv1.0 annot-version=v1.0
MSQPPRAVPFYDDDDIHDPAFARRGCFLLRRGCCCFFFPNLLGKKHPRGGGAAGSSAAFWQRIRPRTPDQSLPWRRGGGKKVSGLSEVGDGPRWKRLIRR
FNIRRKRRGYGKFHYDATSYALNFDDGPLDGRDSYYHDEDLHGRGFSDHYSLPPSAKCSMDFDHDLNFSS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14890 NHL domain-containing protein ... Lus10032160
[exp]
0 1
AT5G06570 alpha/beta-Hydrolases superfam... Lus10016204
[exp]
3.5 0.9404
AT1G75810 unknown protein Lus10034536
[exp]
4.2 0.9293
AT3G01430 unknown protein Lus10014527
[exp]
4.6 0.9606
AT5G19790 AP2_ERF RAP2.11 related to AP2 11 (.1) Lus10008291
[exp]
8.0 0.9421
AT2G29350 SAG13 senescence-associated gene 13 ... Lus10024358
[exp]
8.4 0.9253
AT1G49570 Peroxidase superfamily protein... Lus10009901
[exp]
12.5 0.9191
AT1G02040 C2H2ZnF C2H2-type zinc finger family p... Lus10028173
[exp]
12.7 0.9206
AT3G04070 NAC ANAC047 NAC domain containing protein ... Lus10003269
[exp]
15.1 0.9304
AT5G65110 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) Lus10024038
[exp]
18.3 0.9247
AT2G36835 unknown protein Lus10023919
[exp]
19.3 0.8582

Lus10032160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.