Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40250 334 / 6e-113 RING/U-box superfamily protein (.1) AT1G23980 252 / 7e-81 RING/U-box superfamily protein (.1) AT2G18650 180 / 1e-52 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT3G48030 154 / 1e-43 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G57750 142 / 3e-40 RING/U-box superfamily protein (.1) AT4G30400 146 / 1e-39 RING/U-box superfamily protein (.1) AT4G40070 96 / 3e-22 RING/U-box superfamily protein (.1) AT1G72220 97 / 6e-22 RING/U-box superfamily protein (.1) AT2G35000 94 / 5e-21 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT5G17600 93 / 5e-21 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014526 [exp] 583 / 0 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10029178 [exp] 268 / 3e-87 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10012987 [exp] 254 / 5e-82 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10015502 [exp] 174 / 2e-50 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10019973 [exp] 170 / 5e-49 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10012745 [exp] 96 / 6e-22 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10015901 [exp] 94 / 3e-21 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10037264 [exp] 94 / 4e-21 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10035677 [exp] 92 / 1e-20 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072300 [exp] 373 / 3e-128 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 349 / 8e-119 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 243 / 3e-77 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 229 / 9e-72 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 180 / 6e-52 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 155 / 1e-42 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 102 / 3e-24 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 100 / 3e-23 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 95 / 1e-21 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 95 / 1e-21 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10032161 pacid=23161236 polypeptide=Lus10032161 locus=Lus10032161.g ID=Lus10032161.BGIv1.0 annot-version=v1.0 ATGGAGCATACCCATTTGAAGATGGCTTGGATTCATTATCAAATCCAGCAAAAAGATGGGTATTTGACATACACACCTCCCCCTCCTTCCATTTATCCAT ATACAGATGCTTTCCATAAAGATTCAGCAATTCCATCTACTTCCACTTCGTCTCCGTCATCTTCTGGAGCTAGAATCAGCCCTGCTGTACTGTTCATCAT AGTAATTCTCGCTGTACTATTTTTCGTATCCGGCTTGCTTCACTTGCTTGTTAGATTCCTAGTAAAGCACCCGTCTTCCTCCGGTGGTGGTTCTAATCAC TCGAATAGGGACAACCTGGAATTGTCAAGCTCGGATGCTCTTCAAAGACAGCTCCATCAGCTTTTTAACCTCCATGATTCTGGTCTGGATCAAGCCTTTA TAGATGCGCTGCCTGTTTTCCAGTACAAGGAGATTGTAGGAGGCCTGAAGGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTCTCGGAGAAGGATAA GCTGAGATTGCTTCCTATTTGCAGTCATGCTTTCCATATCTCTTGTATTGACACATGGCTGCTGTCGAACTCTACTTGCCCGCTGTGCAGGGCAACTCTA TTCAATCCCGGGTTTGGAAACCCCATGTTTGATTATGACGATTTTGGAGAGGATGAGGAATGTTGTCCGGGGAGTAATGTGGAGAACAAGGTCCCTTCTT CACAGAAAACTGTGGAGATTGAGGAAGTTGTTGTGAAAAAGGGAGTGGTGCCTGTTCGGCTTGGCAAATTCAGGAGATTAGATGGTGGTGGTGGTGAGGC AGGTGGAGAAACTAGTAGCAGTAATTTAGATGCCCGGAGATGTTTCTCGATGGGTTCGTATCAATATGTGCTAGCCAAGTCGGATCTCAGGGTTCCTTTG AGCAATGACAGGCAAGGCGGCCGTGAAATAAAGCTCGCTATTGAGAGAGAAGATGGTGAGAAGTCCTCAATTGACAAGGACTCTGAAGGTAAGAAGGTTT CTAAAGGTGAGAGCTACTCTGTCTCCAAGATTGGGCTTTGGTACAAGAAGGGTAAGTCTTCAGATGTTAATATGGGTATGCCATCTTCACTTAGCGCGGA TTTGCCATGGATGAACAAAGCGCAAGAGAAATGA
AA sequence Show only first row Show all	>Lus10032161 pacid=23161236 polypeptide=Lus10032161 locus=Lus10032161.g ID=Lus10032161.BGIv1.0 annot-version=v1.0 MEHTHLKMAWIHYQIQQKDGYLTYTPPPPSIYPYTDAFHKDSAIPSTSTSSPSSSGARISPAVLFIIVILAVLFFVSGLLHLLVRFLVKHPSSSGGGSNH SNRDNLELSSSDALQRQLHQLFNLHDSGLDQAFIDALPVFQYKEIVGGLKEPFDCAVCLCEFSEKDKLRLLPICSHAFHISCIDTWLLSNSTCPLCRATL FNPGFGNPMFDYDDFGEDEECCPGSNVENKVPSSQKTVEIEEVVVKKGVVPVRLGKFRRLDGGGGEAGGETSSSNLDARRCFSMGSYQYVLAKSDLRVPL SNDRQGGREIKLAIEREDGEKSSIDKDSEGKKVSKGESYSVSKIGLWYKKGKSSDVNMGMPSSLSADLPWMNKAQEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	0	1
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	1.0	0.9131
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10024240 [exp]	2.0	0.8452
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	2.0	0.8657
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	3.5	0.8551
AT2G44600			unknown protein		Lus10043351 [exp]	3.6	0.8228
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10021913 [exp]	3.9	0.8224
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	4.2	0.8435
AT5G56600		PRF3, PFN3	profilin 3 (.1.2)		Lus10043040 [exp]	5.5	0.8313
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	6.5	0.8365
AT4G38690			PLC-like phosphodiesterases su...		Lus10025062 [exp]	6.6	0.8264

Compare expression of checked genes

Lus10032161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.