Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08680 268 / 1e-80 Leucine-rich repeat protein kinase family protein (.1.2) AT1G60630 242 / 9e-71 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 241 / 1e-70 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 241 / 2e-70 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 239 / 9e-70 RLK902 receptor-like kinase 902 (.1) AT2G36570 237 / 7e-69 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 235 / 1e-68 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 233 / 2e-67 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 229 / 2e-66 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 224 / 1e-64 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014525 [exp] 1118 / 0 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10039422 [exp] 710 / 0 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10039483 [exp] 548 / 0 AT5G58300 241 / 5e-71 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002360 [exp] 496 / 3e-168 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 496 / 3e-168 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 287 / 2e-87 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 229 / 6e-66 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022679 [exp] 226 / 3e-64 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10039321 [exp] 223 / 4e-64 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073500 [exp] 508 / 3e-173 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.012G078100 [exp] 493 / 1e-167 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 300 / 2e-92 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 291 / 2e-89 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 285 / 2e-86 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 280 / 2e-85 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G121700 [exp] 274 / 2e-82 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G086100 [exp] 263 / 6e-79 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 263 / 6e-79 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 258 / 5e-77 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10032162 pacid=23161171 polypeptide=Lus10032162 locus=Lus10032162.g ID=Lus10032162.BGIv1.0 annot-version=v1.0 ATGAATCGACTTCCGATCTACCTGCAGCTCCTCCTTTCCTTTCTTCTCCTCCTCCACTGTGGAAATGGAATTTCCGCGGTGGTGGAGGATGGAGTGAAAC ACTCGCTCATCGGCTTCCTGGCGAAGCTGAACGGAAGCACAACAGGGAAACCTGATGTGAGTTTTGGTTGGGTCGAATCGACCGATCCTTGCCTGAATTC CTGGCTGGGAATCTCCTGCGACTTCTCCAACAAGTCTATCACCAGGATTGATGTTTCAGGACTCGATCTGTCCGGTTCGTTCGACCCTTCTTCCGTCTGC AATTCGGTTTCGTCTCTGAACCTCATCAACCTGCAGAAGAATCAACTTGCTGGCGAAATCCCGGAAGAGATTTCAAACTGTACAAACCTGACTCACTTGC TCATCGGTAAGAACAATTTTTCAGGTCGAATTCCTGACTCCATCGTTGAGATGAAGAATCTCAACAAACTAGATCTCTCCCACAACGTATTCTCCGGAAA CTTACCGGATTTGACCAGACTTCCGGAGCTGACGGTTTTCACTGCTCAGGGGAATCATTTCACCGGTCAAGTACCTTCGTTCAACTTCTCGAAGCTCGAA AAATTCGACATCTCACACAACAACTTCAGCGGCCAGATTCCTGACGTGAAGAGGAAATTCTCTCAGAACTGCTTTCAGGATAATCCTGAACTTTGCGGCC CGCCTTTACCAAAGCCATGTCTGTCCTCGAACATCGTCAGCTCCGAAAGCGATCATCATCAGGTCGATGAAAAGAAGACGAAAAGCGATGAGAGAGATCA GATCTTGATGTACTCCGGATACACAATCGTCGGATTCGGAGTGGTAGTCAGCTTTTTCATGTTTTGGATGTGCAAGAGAAAGCGCAGTGGTGGCATGCGG AACAAGAAAGGTGATTTTGAAAGCAGAGTTGCTTCCGTGGACGATAGCTTCCTGAGCAAGGAAAGCTCAAGCCATGTGAAAGAAAGCAGATCCGAGTACT CGGAGATGACTGGTGAAAGTGGAGGGTTAGTTTCGAGTTCGCTCGTGGTGCTGACGAGCCCTTTGGTGAGCGGGCTGGATTTCGAGCAGTTGTTGAAGGC TCCTGCGGAGTTGCTGGGGAGAGGGAAGCATGGAAGTCTGTATAAGGTGAATTTGAACAGTGGGATGACTGTGGTTGTGAAGAGGGTTAAAGATTGGCCG ATTTCTTCTGGCGATTTCAAGCAGAGGATGCAGAGAGTTCATCAAGTTAGCCATCCTAACGTGTTGCCTACGCTTGCGTTTTACTGTTCTGGACATGAGA AGCTCCTGGTTTATGGGTATCAGGAGAATGGAAGTCTCTTCAGATATCTCCATGGAACAAAGATGGGACAAGCATTCGACTGGGGAAGCAGGCTGACCGT CGCAGCAACAATCGCCGAAGCTCTATCCTTCATGCACAAGAACCTTTACGACGATTCGATCAGCCACGGAAACCTGAAATCCTCCAACATACTCCTCAAC CAAAACCTCGAACCCTGCGTCAGCGAGTACGGTCTGATGCCTTCTACCAATATCACCGCCGACGCTACTGAATCCTCTTCCTCCTCTTCTTCAGAAGGCA ACAACAGCTTCAGCTTCAGTGAAGTGAAGAACCCCAAGATCAATAAGAAGAAATCCTCCCTCCTGGCTTCAGATGCAGCGTTCAAAGCAGATGTTTACGG GTTCGGAGTCATACTTCTCGAGCTGCTGACTGGGAAGACGGTGCAGAACAACGGCGGTATGAGCTTGCCGACGTGGGTCCAGGCCGTGGTTCGAGAAGAA TGGACGGTCGAGGTTTTCGATAAGCATCTGATATCGGAAGGCGCGAGTGAGGAAAGGATGGTGAATGTGCTTCAGGTTGCTATCAAGTGTACGAGTCAGA GTGCTGGTGATCGGCCTACCATCAAGCAGACCGCGGTCATGATTAATGCTATTCGAGATGAAGAAGAGAGGTCGATAACAACTAGTTATTCAAGATAA
AA sequence Show only first row Show all	>Lus10032162 pacid=23161171 polypeptide=Lus10032162 locus=Lus10032162.g ID=Lus10032162.BGIv1.0 annot-version=v1.0 MNRLPIYLQLLLSFLLLLHCGNGISAVVEDGVKHSLIGFLAKLNGSTTGKPDVSFGWVESTDPCLNSWLGISCDFSNKSITRIDVSGLDLSGSFDPSSVC NSVSSLNLINLQKNQLAGEIPEEISNCTNLTHLLIGKNNFSGRIPDSIVEMKNLNKLDLSHNVFSGNLPDLTRLPELTVFTAQGNHFTGQVPSFNFSKLE KFDISHNNFSGQIPDVKRKFSQNCFQDNPELCGPPLPKPCLSSNIVSSESDHHQVDEKKTKSDERDQILMYSGYTIVGFGVVVSFFMFWMCKRKRSGGMR NKKGDFESRVASVDDSFLSKESSSHVKESRSEYSEMTGESGGLVSSSLVVLTSPLVSGLDFEQLLKAPAELLGRGKHGSLYKVNLNSGMTVVVKRVKDWP ISSGDFKQRMQRVHQVSHPNVLPTLAFYCSGHEKLLVYGYQENGSLFRYLHGTKMGQAFDWGSRLTVAATIAEALSFMHKNLYDDSISHGNLKSSNILLN QNLEPCVSEYGLMPSTNITADATESSSSSSSEGNNSFSFSEVKNPKINKKKSSLLASDAAFKADVYGFGVILLELLTGKTVQNNGGMSLPTWVQAVVREE WTVEVFDKHLISEGASEERMVNVLQVAIKCTSQSAGDRPTIKQTAVMINAIRDEEERSITTSYSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26730			Leucine-rich repeat protein ki...		Lus10032162 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010875 [exp]	8.5	0.6363
AT2G20840			Secretory carrier membrane pro...		Lus10031627 [exp]	10.1	0.7237
					Lus10036407 [exp]	14.1	0.6866
AT2G14560		LURP1	LATE UPREGULATED IN RESPONSE T...		Lus10009095 [exp]	25.8	0.6800
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	35.0	0.6167
AT2G35740		ATINT3	nositol transporter 3 (.1)		Lus10017559 [exp]	38.1	0.6577
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	39.9	0.6439
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10038844 [exp]	52.5	0.6123
AT1G54860			Glycoprotein membrane precurso...		Lus10004470 [exp]	85.9	0.6208
AT2G03630			unknown protein		Lus10004647 [exp]	96.0	0.5634

Compare expression of checked genes

Lus10032162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.