Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40200 826 / 0 DEGP9 DegP protease 9 (.1) AT2G47940 493 / 8e-169 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G36950 425 / 2e-142 DEGP10 DegP protease 10 (.1) AT1G65630 367 / 2e-120 DEGP3 DegP protease 3 (.1) AT1G65640 332 / 2e-108 DEGP4 DegP protease 4 (.1) AT3G16540 316 / 1e-100 DEGP11 DegP protease 11 (.1) AT5G40560 299 / 5e-96 DEGP13 DegP protease 13 (.1) AT3G16550 282 / 2e-88 DEGP12 DEGP protease 12 (.1) AT1G51150 145 / 3e-40 DEGP6 DegP protease 6 (.1) AT5G54745 115 / 2e-29 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014524 [exp] 1032 / 0 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10024525 [exp] 431 / 2e-145 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10005931 [exp] 308 / 1e-98 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10008726 [exp] 295 / 5e-95 AT5G36950 443 / 7e-153 DegP protease 10 (.1) Lus10008727 [exp] 120 / 1e-30 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10008781 [exp] 67 / 1e-11 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10040905 [exp] 62 / 3e-11 AT2G47940 110 / 5e-29 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10037815 [exp] 58 / 1e-08 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10007262 [exp] 49 / 5e-06 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073100 [exp] 814 / 0 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.012G077900 [exp] 800 / 0 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.002G207200 [exp] 510 / 2e-175 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 509 / 8e-175 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.008G079900 [exp] 435 / 1e-146 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.001G348800 [exp] 64 / 1e-10 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 56 / 7e-08 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.013G018300 [exp] 55 / 8e-08 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.011G083300 [exp] 48 / 9e-06 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1) Potri.007G067850 [exp] 44 / 5e-05 AT5G40200 45 / 5e-06 DegP protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [flax] [poplar] Peptidase_PA PF00089 [flax] [poplar] Trypsin Trypsin
Representative CDS sequence Show only first row Show all	>Lus10032163 pacid=23161127 polypeptide=Lus10032163 locus=Lus10032163.g ID=Lus10032163.BGIv1.0 annot-version=v1.0 ATGGTGAACAAGCGGAGGACCAGGAAACGAACCCTAACTCCCGATAATCCCCCCGCCACACAACCCACCTCCTCAATCGACGCCGTTCCTCTATCCTCTT CACCGCCAGAGTCACCCGCCGTCGCCCCCGCCTCCGACGGCGAACTATCTCCCCGCCGCGGCAGAGGGAGGCCCAGACACTCCGGTAAAAAACGGAAAGA AAGGCCGTCTGAACCTACTACGTCCCCACCAGAACGGCGGCTAACAAGGAACCAGAAGGCCAGCGACCTCAATGGACACGCCACCAACGGCTTGGTGAGC CCTGTGGTTGAGTGGGACACTGTTGTTCGCGTGGGTCCGTCCATGGACGCTGTAGTGAAGGTTTTCTGCGTCCACACGGACCCTAATTTCTCGCTTCCTT GGCAACGGAAGCGGCAGTATAGTTCCAGCAGTAGCGGGTTTATCGTTGAAGGGAGGAGAGTTCTGACCAATGCCCACTCCGTCGAGCATCACACTCAGGT GAAACTCAAGAAGAGGGGCTCAGACACCAAGTACTTGGCTACGGTTTTGGCCATTGGAACCGAATGCGACATTGCATTGCTGACTGTTGATGATGATGAG TTTTGGGAGGACATTAAACCGGTTGAGTTTGGGAATTTGCCTGCGCTTCAAGATGCTGTGACTGTTGTTGGCTACCCCATAGGGGGTGACACTATCTCTG TGACGAGTGGTGTTGTATCGCGGATAGAGGTCCTGTCTTATGTCCACGGGACAACTGAGCTTCTGGGCCTCCAGATAGATGCAGCTATAAACTCGGGAAA TTCTGGTGGGCCTGCTTTCAACGACAAGGGAAAGTGTGTTGGCATTGCATTTCAGTCTTTGAAACATGACGATGCAGAAAATATTGGATATGTAATACCA ACACCAGTTATAAAGCATTTTATCTCCGATTACGAGAAGAACGGTGTTTATACAGGATTCCCTATTCTTGGAATTGAGTGGCAGAAGATGGAAAATCCTG ATTTGCGGACATCAATGGGGATGAGACCTGACCAGAAGGGCGTCCGTATTAGAAGAATCGAGCCAACTGCTCCGGAATGTCAAGTCTTGAAGCCGTCTGA TGTGCTCTTAAGTTTTGATGAAGTAAGCATAGCAAACGACGGAACAGTTCCTTTCAGACATGGAGAACGCATAGGATTCAGCTACCTAGTTTCTCATAAA TACACTGGTGATGAAGCTTCGGTGAAAGTTCTTCGCAATTCTAAAGTACTTGAGTTCAAGATAAAACTTGCAACTCAAAAGAGACTCATTCCTGCACACA TAAACGGGAAACCTCCTTCATATTACATCGTCGCGGGCTTTGTTTTCGCTGCCGTATCAGTACCGTATCTGCGCTCAGAGTATGGAAAAGACTACGAGTT CGAAGCTCCAGTTAAGCTATTGAACATGCATCTTCATGCAATGGCTGAACATGCAGATGCACAACTTGTTGTCGTCTCACAGGTACTTGTCGCTGATATT AACATCGGATACGAGGAAATCGTCAACACCCAGGTTCTGACGTTCAATGGGAAACCTGTGAAGAATTTGAAGAGCTTAGCTCTCATGGTCGAAAGCTGTG AGGATGAATATTTGAAGTTCGAGTTAGAATACCAGCAGGTGGTGGTTCTGAAAAATGAGACGGCAAAGGCAGCAACGTTAGATATCCTTGCAATGCATTG CATACCATCTGCAATGTCTGACGATCTCAGGCCGTGA
AA sequence Show only first row Show all	>Lus10032163 pacid=23161127 polypeptide=Lus10032163 locus=Lus10032163.g ID=Lus10032163.BGIv1.0 annot-version=v1.0 MVNKRRTRKRTLTPDNPPATQPTSSIDAVPLSSSPPESPAVAPASDGELSPRRGRGRPRHSGKKRKERPSEPTTSPPERRLTRNQKASDLNGHATNGLVS PVVEWDTVVRVGPSMDAVVKVFCVHTDPNFSLPWQRKRQYSSSSSGFIVEGRRVLTNAHSVEHHTQVKLKKRGSDTKYLATVLAIGTECDIALLTVDDDE FWEDIKPVEFGNLPALQDAVTVVGYPIGGDTISVTSGVVSRIEVLSYVHGTTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHDDAENIGYVIP TPVIKHFISDYEKNGVYTGFPILGIEWQKMENPDLRTSMGMRPDQKGVRIRRIEPTAPECQVLKPSDVLLSFDEVSIANDGTVPFRHGERIGFSYLVSHK YTGDEASVKVLRNSKVLEFKIKLATQKRLIPAHINGKPPSYYIVAGFVFAAVSVPYLRSEYGKDYEFEAPVKLLNMHLHAMAEHADAQLVVVSQVLVADI NIGYEEIVNTQVLTFNGKPVKNLKSLALMVESCEDEYLKFELEYQQVVVLKNETAKAATLDILAMHCIPSAMSDDLRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10032163 [exp]	0	1
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10010523 [exp]	2.0	0.9410
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	2.4	0.9411
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	3.5	0.9371
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	5.5	0.9360
AT4G30840			Transducin/WD40 repeat-like su...		Lus10007707 [exp]	7.7	0.9117
AT3G19440			Pseudouridine synthase family ...		Lus10027863 [exp]	9.3	0.9056
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	10.6	0.9217
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	10.6	0.9227
AT5G19320		RANGAP2	RAN GTPase activating protein ...		Lus10034066 [exp]	10.9	0.9205
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Lus10042952 [exp]	13.5	0.9389

Compare expression of checked genes

Lus10032163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.