Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40190 236 / 3e-80 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT3G28140 210 / 8e-70 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014523 [exp] 353 / 2e-126 AT5G40190 255 / 1e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10039477 [exp] 310 / 4e-109 AT5G40190 266 / 3e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10039437 [exp] 308 / 2e-108 AT5G40190 265 / 8e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350300 [exp] 290 / 2e-101 AT5G40190 264 / 3e-91 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.017G073800 [exp] 272 / 3e-94 AT5G40190 247 / 1e-84 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032164 pacid=23161086 polypeptide=Lus10032164 locus=Lus10032164.g ID=Lus10032164.BGIv1.0 annot-version=v1.0 ATGTCACAGGGCTACGCAATCGAGCTCTACTTAGACCCAGCGCTGGAGAACCAGGTTTTGAAAGCCTGGAACGTGCTAGCTCGCCGCCAAATCAGCACCC AACTCATCGAAATCGAGTCTCGTCCTCACATAACCCTCTATTCAACCCCTTACAACATCATCGAACCCAGCATGAATAAGCTGGAATCCGTGCTGAGAAC CTTTGCTTCCAAGCAGGAACCTCTGCCCTTGTCTCTATCAACGATCGGCACTTTCCCAAGCGACGGCAATGTCCTCTTCCTATCCCCGACGCCTTCCCTC TCTTTGCTTCAGTTCCATTCCCAGCTATGCGACGCGATGAAGAAGGAAGGGATCGAGATGGGCGATGAGTATCGGCCTGACAGCTGGATTCCTTACTGTG CTGTGGCTCAGGACGTTCCAAGGGCGAGAATGGGGGAGGCCTTTTGTGTTGTTAGAGACTTGAAGCTGCCTGTTTCTGGGTATGCAATGGATATTGGAGT TGTGGAGTTCTCTCCAGTCCGCGAGTTGTGCTCATTTGTGCTTGGTAACGCTTTTGAATGA
AA sequence Show only first row Show all	>Lus10032164 pacid=23161086 polypeptide=Lus10032164 locus=Lus10032164.g ID=Lus10032164.BGIv1.0 annot-version=v1.0 MSQGYAIELYLDPALENQVLKAWNVLARRQISTQLIEIESRPHITLYSTPYNIIEPSMNKLESVLRTFASKQEPLPLSLSTIGTFPSDGNVLFLSPTPSL SLLQFHSQLCDAMKKEGIEMGDEYRPDSWIPYCAVAQDVPRARMGEAFCVVRDLKLPVSGYAMDIGVVEFSPVRELCSFVLGNAFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10032164 [exp]	0	1
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	6.5	0.8069
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	12.6	0.8043
AT4G07400		VFB3	VIER F-box proteine 3 (.1)		Lus10024799 [exp]	14.5	0.7937
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	15.7	0.7647
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Lus10032095 [exp]	16.0	0.7633
AT3G60380			unknown protein		Lus10028193 [exp]	16.2	0.7382
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	20.6	0.7927
AT4G18400			unknown protein		Lus10023291 [exp]	21.1	0.7053
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	22.3	0.7816
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	22.8	0.7788

Compare expression of checked genes

Lus10032164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.