Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40160 283 / 2e-94 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G66055 150 / 1e-41 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT2G03430 68 / 5e-13 Ankyrin repeat family protein (.1) AT3G04710 67 / 4e-12 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G25600 64 / 7e-11 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G13300 62 / 1e-10 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT2G14255 62 / 2e-10 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G20350 62 / 2e-10 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G27780 61 / 3e-10 ACBP2 acyl-CoA binding protein 2 (.1) AT5G14230 61 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014522 [exp] 509 / 0 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10041853 [exp] 157 / 7e-44 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10028399 [exp] 103 / 3e-24 AT5G66055 398 / 3e-135 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10023911 [exp] 70 / 6e-14 AT3G09890 219 / 6e-73 Ankyrin repeat family protein (.1.2) Lus10021508 [exp] 69 / 2e-13 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10014410 [exp] 67 / 7e-13 AT3G09890 217 / 5e-72 Ankyrin repeat family protein (.1.2) Lus10022609 [exp] 65 / 2e-12 AT3G09890 181 / 1e-58 Ankyrin repeat family protein (.1.2) Lus10002621 [exp] 67 / 5e-12 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10037694 [exp] 67 / 7e-12 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295200 [exp] 276 / 8e-92 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.005G105800 [exp] 153 / 9e-43 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.007G060400 [exp] 149 / 3e-41 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.013G062000 [exp] 70 / 5e-13 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 68 / 7e-13 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G333600 [exp] 69 / 2e-12 AT5G14230 975 / 0.0 unknown protein Potri.001G130500 [exp] 67 / 2e-12 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.016G097900 [exp] 66 / 2e-12 AT3G09890 214 / 5e-71 Ankyrin repeat family protein (.1.2) Potri.006G121500 [exp] 64 / 1e-11 AT3G09890 196 / 1e-63 Ankyrin repeat family protein (.1.2) Potri.003G103400 [exp] 61 / 1e-10 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10032165 pacid=23161223 polypeptide=Lus10032165 locus=Lus10032165.g ID=Lus10032165.BGIv1.0 annot-version=v1.0 ATGGTGCTGACAGGAGTTAAAATTGCTTCCACTGCTCTGCTTGGATATCATGGGGTGCTTTGTTCTTCTCCAGTTCTAAGACTGACTCATCGGATCAATC TCCATCAATTTTCTCGAAATGGGAGATTCGCGTTTCATCTAGAGCAGAAATGGCCAGCTACGTTGACAACTGGTGTGGCTGACTCAAATGAGGCATTTCC CTTTGAGACACACTATGGAGTTTGGGAAGATCCTTGTGATGAAACTGATAACAATTATGATGATGATGATGGTGAAGATGAAGAAAATGAACAAGTGGAC TCTGAATCCGATGACGAGGGTGATTCAGGAGGCAAATCTGATGCTCTAATCACTAGTACTACTGCTTCAGACACCTATGACGAAGATCTTGTGAAAGAGG TTGAACAGCTTTTAACACCTGGAGAAAGAGCCATTCTAGAGCACCATCCAACTCCTAATCTTGCCAAGATATCAACTATAAAAGATAAACAGACGCTTGC ACTGTCAGGTCAGATAAAGCATATGGACAAACTGGTTAATGGCGGACTCGACATCGATAGCGTAGACAAGGATGGCCGAACTGCTCTCCATACTGCCGTT ATCGGTAAGAAAGAGGCTGGAATCACTCATCTCCTCCGAAAAAGTATCAGTCATCTCCTCCGAAAAGGTGCCAATCCACATATTAGAGACAAGGATGGAG CCAGCCCTCTGCATTATGCTGCCCAAGTTGGAGCTTTGCAAACTGTGAAATTGTTGGTCAAATACAAAGTTGACGTCAATGTGACAGATGAAGAAGGGTG GACGCCACTGCACATAGCTGTGCAGAGTAGGAACCGGGATATAACGAAAGTGCTGCTGGTGAATGGTGCAGACGATACAAGAAGAAACAAGAATGGAACC ACAGCAATGGATATTGCGTTACGATATGGAAGAGACTTCAAGTCTTATGACCTTGCCAAGCTCCTTAAGGTTGTACCTGCGAACAGAAGTCCGTAA
AA sequence Show only first row Show all	>Lus10032165 pacid=23161223 polypeptide=Lus10032165 locus=Lus10032165.g ID=Lus10032165.BGIv1.0 annot-version=v1.0 MVLTGVKIASTALLGYHGVLCSSPVLRLTHRINLHQFSRNGRFAFHLEQKWPATLTTGVADSNEAFPFETHYGVWEDPCDETDNNYDDDDGEDEENEQVD SESDDEGDSGGKSDALITSTTASDTYDEDLVKEVEQLLTPGERAILEHHPTPNLAKISTIKDKQTLALSGQIKHMDKLVNGGLDIDSVDKDGRTALHTAV IGKKEAGITHLLRKSISHLLRKGANPHIRDKDGASPLHYAAQVGALQTVKLLVKYKVDVNVTDEEGWTPLHIAVQSRNRDITKVLLVNGADDTRRNKNGT TAMDIALRYGRDFKSYDLAKLLKVVPANRSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10032165 [exp]	0	1
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Lus10015701 [exp]	1.7	0.9290
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	2.8	0.9436
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	3.0	0.9440
AT5G02710			unknown protein		Lus10003988 [exp]	5.2	0.8977
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	7.7	0.9063
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10024735 [exp]	10.0	0.8822
AT2G30695			unknown protein		Lus10008363 [exp]	10.9	0.9189
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	11.0	0.9242
AT5G10620			methyltransferases (.1)		Lus10020175 [exp]	11.7	0.9028
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039687 [exp]	11.8	0.9013

Compare expression of checked genes

Lus10032165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.