Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01410 163 / 2e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G24090 152 / 1e-43 RNase H family protein (.1) AT5G51080 142 / 6e-41 RNase H family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014521 [exp] 373 / 1e-130 AT3G01410 245 / 2e-80 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10020869 [exp] 138 / 3e-38 AT1G24090 297 / 8e-99 RNase H family protein (.1) Lus10033508 [exp] 137 / 8e-38 AT1G24090 283 / 3e-93 RNase H family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00075 [flax] [poplar] RNase_H RNase H CL0219 [flax] [poplar] PF01693 [flax] [poplar] Cauli_VI Caulimovirus viroplasmin
Representative CDS sequence Show only first row Show all	>Lus10032166 pacid=23161204 polypeptide=Lus10032166 locus=Lus10032166.g ID=Lus10032166.BGIv1.0 annot-version=v1.0 ATGGAGCGGGAGAGGGACGCTTTCTACGTTGTACGGAAAGGCGATATGATCGGCGTCTACAAGAGCTACCCTGACTGTCTATCTCAAGTTTCGGATCCTT CAGTAAGTGTGTTCAAAGGGTATGGCTTAACCAGGGCGGCCGAGCAATTCCTTGTCTCTCATGGGATTGCAAATGCCGCTTACTCCCTCAGTGTTTCCAA TGTTCACAACAATCTGTTTGGGAAACTTGAGCCTTGCCGCGTTCAGACGTGTGGAATTGCGATTGTGGAGAACTCCCAAAACAAGTATCCGAGGTTAGAG AACAGTAAAAGCCGCGAAGAACCTCCAATCATGGCAATGCCAGCAAGTCTTTATTTTGACGGCGCTTCAAAAGGAAATCCAGGACCAGCTGGTGCAGGCG CTGCTCTGTACTCTCCTGATGGAAGAATGGTGTGGCGATTATGTGAAGGCGTAGGGATAGCAACAAATAATGTTGCTGAATATCGAGGACTGCTTCTGGG ATTGAAGCAAGCGTTAAAAAAAGGGTTCATAGATATTAGTGTCCAAGGGGATTCTAATCTTGTCTGTATGCAGATTCAGGGCATCTGGAAGGTAAAAAAC AAGAACCTGGCGAACGTGGGTCAGGAAGCCAGAGATCTCAAGGACAGGTTTCGTACTTTCCAGATCAGCCATATTCCTAGGATTGACGTCCCTTTTTGGG TCCTTTTGGATCTCTGCTCTGTAAGTAAGACTCCGGCCGTAGGAAGTAATGAATTGATTGAAATGGAGAGTTCTTATGTACGCATGTTGCGAGTATTGGT CCTTGCTAAGTTTCCAGAATGTAAGCAAGCTGAAGTAAGTGAAGTGTCACAAGGCAAAAAAACAGTGTAG
AA sequence Show only first row Show all	>Lus10032166 pacid=23161204 polypeptide=Lus10032166 locus=Lus10032166.g ID=Lus10032166.BGIv1.0 annot-version=v1.0 MERERDAFYVVRKGDMIGVYKSYPDCLSQVSDPSVSVFKGYGLTRAAEQFLVSHGIANAAYSLSVSNVHNNLFGKLEPCRVQTCGIAIVENSQNKYPRLE NSKSREEPPIMAMPASLYFDGASKGNPGPAGAGAALYSPDGRMVWRLCEGVGIATNNVAEYRGLLLGLKQALKKGFIDISVQGDSNLVCMQIQGIWKVKN KNLANVGQEARDLKDRFRTFQISHIPRIDVPFWVLLDLCSVSKTPAVGSNELIEMESSYVRMLRVLVLAKFPECKQAEVSEVSQGKKTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	0	1
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	7.9	0.6856
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Lus10043419 [exp]	11.5	0.6901
					Lus10028086 [exp]	13.2	0.7276
AT5G16950			unknown protein		Lus10026852 [exp]	27.4	0.6802
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027452 [exp]	28.5	0.6642
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	34.6	0.6885
AT4G02110			transcription coactivators (.1...		Lus10002432 [exp]	34.7	0.6876
AT1G19980			cytomatrix protein-related (.1...		Lus10034526 [exp]	35.8	0.6289
					Lus10017083 [exp]	38.2	0.5831
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	39.3	0.6719

Compare expression of checked genes

Lus10032166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.