Plant FIBer expression Database

Lus10032167 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14910 124 / 4e-36 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014520
[exp]
263 / 8e-91 AT5G14910 152 / 4e-47 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G350500
[exp]
132 / 4e-39 AT5G14910 144 / 4e-44 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10032167 pacid=23161085 polypeptide=Lus10032167 locus=Lus10032167.g ID=Lus10032167.BGIv1.0 annot-version=v1.0
ATGGCGTCACTGGGATTGGTAGCTTCATCTTCAACCCTACACTCCATTGCCGCACCCAATTCTCACTGCCTTCAATCAAAGCATTACCTCCATCTGCGCG
CTACAGACCTCCAAGTCCGAAGCCATCGATTGCCCCTTTCTTTCAGCACCAACAAGTGTAGCAGCAATTCCAGCGGAAGGCGGTTTAGATTGAGGTCAGC
TGAACAGGAAACGCTTATCCCAGAAGGAGATGAACCAGCAGCTTCTCAGGAATCTGTGTCTGTCCCTGTATCTCCTTCCGACACTCTCACCATGTACTTT
GAGGCAGAGGGTACTATGAATGACTCGGCTATTCCCACGGTCAAGAAGCGTTTAGAGGGGACTGAAGGAATTTCAGATTTGAAGGTTCAAGTCCTTGAGG
GCATTGCTACCGTCCAGTTGAAAAAGCAAACAACAGTGCAGGCAACAGGCGTAGCCTCTGGTCTGGTGGAACTCATACAAGGTTTAGGGTTCAAGTTACA
GACATTGAATTTGAGCTTCGAGGATGAAGAGGATCTCGTCGTGGAAACGTTGGAATCTAATTAG
AA sequence
>Lus10032167 pacid=23161085 polypeptide=Lus10032167 locus=Lus10032167.g ID=Lus10032167.BGIv1.0 annot-version=v1.0
MASLGLVASSSTLHSIAAPNSHCLQSKHYLHLRATDLQVRSHRLPLSFSTNKCSSNSSGRRFRLRSAEQETLIPEGDEPAASQESVSVPVSPSDTLTMYF
EAEGTMNDSAIPTVKKRLEGTEGISDLKVQVLEGIATVQLKKQTTVQATGVASGLVELIQGLGFKLQTLNLSFEDEEDLVVETLESN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14910 Heavy metal transport/detoxifi... Lus10032167
[exp]
0 1
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Lus10029120
[exp]
3.5 0.9773
AT5G14910 Heavy metal transport/detoxifi... Lus10014520
[exp]
4.0 0.9753
AT1G50900 LTD, GDC1 LHCP translocation defect, Gra... Lus10043055
[exp]
5.2 0.9693
AT5G11450 PPD5 PsbP domain protein 5, Mog1/Ps... Lus10022110
[exp]
7.4 0.9659
AT2G32180 PTAC18 plastid transcriptionally acti... Lus10030017
[exp]
8.1 0.9492
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Lus10041940
[exp]
8.9 0.9668
AT2G33450 Ribosomal L28 family (.1) Lus10023747
[exp]
10.6 0.9642
AT3G63190 HFP108, AtcpRRF... "ribosome recycling factor, ch... Lus10042587
[exp]
10.8 0.9613
AT5G54600 Translation protein SH3-like f... Lus10005180
[exp]
11.2 0.9656
AT5G22340 unknown protein Lus10034185
[exp]
11.8 0.9506

Lus10032167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.