Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14930 306 / 1e-96 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G52430 137 / 3e-34 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 57 / 2e-08 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 51 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT3G07400 47 / 4e-05 lipase class 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014518 [exp] 1009 / 0 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10039444 [exp] 566 / 0 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10009502 [exp] 534 / 0 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 454 / 4e-155 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 431 / 5e-145 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10004841 [exp] 136 / 1e-37 AT5G14930 99 / 4e-25 senescence-associated gene 101 (.1.2.3) Lus10029534 [exp] 142 / 2e-35 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10039617 [exp] 140 / 5e-35 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 78 / 8e-15 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290600 [exp] 486 / 8e-166 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 467 / 2e-158 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 458 / 8e-155 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 439 / 1e-147 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.005G068700 [exp] 131 / 5e-32 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.012G074700 [exp] 125 / 6e-30 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G100600 [exp] 122 / 6e-29 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G291033 [exp] 107 / 9e-27 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.001G291166 [exp] 79 / 6e-18 AT5G14930 55 / 3e-10 senescence-associated gene 101 (.1.2.3) Potri.015G069600 [exp] 74 / 2e-13 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10032169 pacid=23161183 polypeptide=Lus10032169 locus=Lus10032169.g ID=Lus10032169.BGIv1.0 annot-version=v1.0 ATGAACCAGCAGCCTCAAATATTCGACAGTGGGCTGGAACTGGCGAGCTCTGTGGTGAATTCAGACTTGCTGCAGGTGTCATGGAGCTCCATCACCAGTC TCTACTCAGAAACCAAGGCAAACCCACAAAGACCATCTGCATCTAATCTGTCTCCAAGGTTTCGAATTTACCAGCAGCAGGACAACAAGTGTACGGTCGT GGCGTTTGTGACTTCACCAATCTACTCCCCAGCTGGCGGCCAAGGTGGAGGAGACTCAGAGTTGCTGGTTTCATCGGAGGATCTGAGGAAGCAGAGCTCC CCGCACTTGGATTTCCTCTGTTCCAAAGCTAACCCTTCTTTCTCCGTCAACAACGCTGCTGTCACCTGTTTCGCCTCTCTTTTCAACGATCTGCAAGCTC TCCCTTCTCAACTGATTGTTTCGAAACCAAACGAGACGTCCCTGAAATCGAGACTAATAGTGACAGGACACGCGCTAGGAGGATCAATCGCATCACTCTT CACGCTATGGCTGCTAGACAAGATGAGCTCCAAGAAGCCATCGAAGAACCTCCCACTCTGCATCACCTTCGGGTCGCCTCTCATGGGAGACAGAGGACTC CAACGAGCCATTTCGCAACGGTCAACGTGGAACTCTTGCTTCCTCCACGTTGCTGCTGCAGTTACTCACGACCCTCTCCCCGCCCGCTTCCTGCAAACTA ACAACAACAACAATGGTGGTCACACTTACAAGCCGTTCGGCACGTTTCTCTTCTGTTCCGATGATGGCCGAAGCTGTGGCTGGGTTGAGGACCCTGAAAT CGTTTCGATTTTGCTTTCACACAAGGGTAGTGGATTGGGAGCGTCGTCTGGCGATTCGGGTTCTGGATCATCGGTTGATGGGTATGGGAAATTGGTTGAA AGTCTAAAGCTTAGAGTAATTTGTCAAGGGAGTTGTGAACTTGGTGGATCAGTTGGGGATTCCCTCCAGGCTGGGATTGCTTTGCAGCTTCGATCCATCG GCATTTCGGATAAGAACCAGAGCATCAAAAGCTTGGCAGAGTCGGTGGAGAAGAAGGCGAGGTTCACAGCACTAAGGAAAAGGAGCGCCACAGAGCAAAG CAGGAAAGTCCAGGAAACCAAGGTCAAAATGGCCTACTTCGAATGGTACAAAAAGGACTCCAAGCTGAACAGAAGAGCATGCTACTACGACACTTACAAA TCCCAGACCACAATAGCCGACATGGAAATCGCCAAGTACAAGAAATTCCTCACAAACTACTGGAGAGACGTCGTGGAAGACGCCGAGAGCCGGCCCCAAA AAGAAGGCTCATTCTTCCGTACGACGTTCCTCTACGGAGGAACGAACTACAGAAGAATGGTGGAGCCCCTAGACATCGCGGAGTTCTACCGAGAAGGGAA AACCAATTACAAGAGCCAGGGGAGGGCCAAGCATTACGTTCTGTTGGAGAAATGGCTCGAGGATGACGCGAAGGAGAAGGTGGGTAAGAAGAAGAAGCAC GGTCCGGGGGATAATTTGAACGAGGATTCGTGTTTCTGGGCGAATGTCGAGGAGGCGTTGGTTCGGGTTAGGTTGCTGAAGAAGGTTGGGGGTGGTGGTT CTTATTCAGGGGAGGCGAAGAAATGTTTGGTGGAGTTTTTGGGGTACGTAATGGGGCAGATTGAGAATTATGGGGTGGATCCTGAAATTTTCCTGGGGGA GAGTTCTTTCATGATTTGGTGGAAGGAGTTTCAGGAGGTTTTGGGGATTGTTGGCAGTGGTGATGATCCATTGGTTCAATATATGAAGAGTGGTAAGTAT CGTTACTATGGTTCTTCCAAGTGA
AA sequence Show only first row Show all	>Lus10032169 pacid=23161183 polypeptide=Lus10032169 locus=Lus10032169.g ID=Lus10032169.BGIv1.0 annot-version=v1.0 MNQQPQIFDSGLELASSVVNSDLLQVSWSSITSLYSETKANPQRPSASNLSPRFRIYQQQDNKCTVVAFVTSPIYSPAGGQGGGDSELLVSSEDLRKQSS PHLDFLCSKANPSFSVNNAAVTCFASLFNDLQALPSQLIVSKPNETSLKSRLIVTGHALGGSIASLFTLWLLDKMSSKKPSKNLPLCITFGSPLMGDRGL QRAISQRSTWNSCFLHVAAAVTHDPLPARFLQTNNNNNGGHTYKPFGTFLFCSDDGRSCGWVEDPEIVSILLSHKGSGLGASSGDSGSGSSVDGYGKLVE SLKLRVICQGSCELGGSVGDSLQAGIALQLRSIGISDKNQSIKSLAESVEKKARFTALRKRSATEQSRKVQETKVKMAYFEWYKKDSKLNRRACYYDTYK SQTTIADMEIAKYKKFLTNYWRDVVEDAESRPQKEGSFFRTTFLYGGTNYRRMVEPLDIAEFYREGKTNYKSQGRAKHYVLLEKWLEDDAKEKVGKKKKH GPGDNLNEDSCFWANVEEALVRVRLLKKVGGGGSYSGEAKKCLVEFLGYVMGQIENYGVDPEIFLGESSFMIWWKEFQEVLGIVGSGDDPLVQYMKSGKY RYYGSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	1.0	0.9681
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	1.4	0.9611
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	1.7	0.9600
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	2.2	0.9305
AT3G21460			Glutaredoxin family protein (....		Lus10012815 [exp]	2.4	0.9303
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	2.6	0.9257
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	2.8	0.9385
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10032446 [exp]	3.6	0.8998
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	4.9	0.9036
					Lus10041943 [exp]	5.5	0.9117

Compare expression of checked genes

Lus10032169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.