Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40150 281 / 1e-95 Peroxidase superfamily protein (.1) AT3G28200 278 / 1e-94 Peroxidase superfamily protein (.1) AT5G47000 217 / 2e-70 Peroxidase superfamily protein (.1) AT1G24110 211 / 2e-68 Peroxidase superfamily protein (.1) AT4G17690 198 / 3e-63 Peroxidase superfamily protein (.1) AT2G18980 152 / 2e-45 Peroxidase superfamily protein (.1) AT4G37520 150 / 2e-44 Peroxidase superfamily protein (.1.2) AT5G67400 149 / 5e-44 RHS19 root hair specific 19 (.1) AT4G37530 147 / 2e-43 Peroxidase superfamily protein (.1.2) AT5G14130 144 / 4e-42 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014517 [exp] 394 / 3e-142 AT5G40150 280 / 2e-95 Peroxidase superfamily protein (.1) Lus10039471 [exp] 331 / 2e-117 AT5G40150 290 / 2e-99 Peroxidase superfamily protein (.1) Lus10039445 [exp] 334 / 1e-116 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10029201 [exp] 236 / 2e-79 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) Lus10010716 [exp] 238 / 7e-79 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10004234 [exp] 216 / 3e-70 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 215 / 1e-69 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10013955 [exp] 158 / 1e-46 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10011079 [exp] 155 / 2e-46 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351000 [exp] 280 / 2e-95 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 241 / 4e-80 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 236 / 4e-78 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 178 / 2e-55 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 158 / 2e-47 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.007G053400 [exp] 156 / 7e-47 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.001G329200 [exp] 152 / 2e-45 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.017G064100 [exp] 152 / 3e-45 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.018G089900 [exp] 146 / 6e-43 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.008G103200 [exp] 145 / 1e-42 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10032170 pacid=23161274 polypeptide=Lus10032170 locus=Lus10032170.g ID=Lus10032170.BGIv1.0 annot-version=v1.0 ATGGTCGGCGGCCCCTTCTACGACGTCCCGCTCGGCCGCCTCGACTACCGCGTCTCCAAATCCTCCGCCGTTCCCGGAAACCTCCCGCTGCCGTCGACCC CGATGTCGCAGATGATCGACATGTTCGCCGCCAGGGGATTCTCCGTCCAAGAGATGGTCGCTCTTAGCGGGGCCCACACCATCGGATTCTCCCACTGTGA AGAGTTCAGCGGAGATCTGTACAACACCACCGCCACGGCGGGGGGAAGTAACTACAATCCGCGATTCGCAGCGGCGTTGCAGAAGGCGTGCGCGAATTAC AAGAAGGACCCGTCGATCTCGGTGTTCAACGATATAATGACACCGAACAAATTCGACAATGTGTACTACCAGAACTTGCCCAAGGGGCTGGGACTGCTGA AGTCGGACCATGGATTGGTGAAAGACGATCGCACCCGGCCGTTTGTGGAGATTTATGCGAAAGATCAGAACAAGTTTTTCAAGGATTTCGCCACTGCGAT GCAGAAGCTGAGCGTGTATGGTATCAAGACTGGGAGACGAGGCGAGATTAGGCACAGGTGCGATGCTGCCAACTGA
AA sequence Show only first row Show all	>Lus10032170 pacid=23161274 polypeptide=Lus10032170 locus=Lus10032170.g ID=Lus10032170.BGIv1.0 annot-version=v1.0 MVGGPFYDVPLGRLDYRVSKSSAVPGNLPLPSTPMSQMIDMFAARGFSVQEMVALSGAHTIGFSHCEEFSGDLYNTTATAGGSNYNPRFAAALQKACANY KKDPSISVFNDIMTPNKFDNVYYQNLPKGLGLLKSDHGLVKDDRTRPFVEIYAKDQNKFFKDFATAMQKLSVYGIKTGRRGEIRHRCDAAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10014517 [exp]	1.0	0.9425
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	1.4	0.8719
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	2.0	0.8616
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10031685 [exp]	2.4	0.8654
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	4.2	0.8285
AT4G28230			unknown protein		Lus10033724 [exp]	6.0	0.8434
AT4G39840			unknown protein		Lus10024058 [exp]	6.9	0.8295
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	7.5	0.8357
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	8.1	0.8517
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004659 [exp]	9.1	0.7752

Compare expression of checked genes

Lus10032170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.