Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79120 429 / 2e-150 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 149 / 3e-41 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 148 / 4e-40 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 135 / 5e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 124 / 2e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 119 / 4e-30 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT4G33495 117 / 1e-29 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 115 / 4e-29 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G63090 114 / 2e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 113 / 5e-28 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014514 [exp] 597 / 0 AT1G79120 420 / 1e-146 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 147 / 2e-40 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 135 / 2e-35 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 132 / 6e-35 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 133 / 7e-35 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10041673 [exp] 127 / 6e-33 AT1G06440 495 / 2e-175 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 125 / 1e-32 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 124 / 4e-32 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005755 [exp] 124 / 1e-31 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G439100 [exp] 466 / 7e-165 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 154 / 7e-43 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 136 / 1e-36 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 131 / 5e-34 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 131 / 5e-34 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 126 / 9e-33 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 123 / 9e-32 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.015G141700 [exp] 119 / 7e-30 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 115 / 8e-29 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 113 / 4e-28 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10032172 pacid=23161135 polypeptide=Lus10032172 locus=Lus10032172.g ID=Lus10032172.BGIv1.0 annot-version=v1.0 ATGCATAGAAGACAATCGTCACTTCGGTTCTATCTGTGTAGCAAGACTTATGAGTCGCCGTTCCCATTTCAGAACTCTGGTTCAATCTTGGTTTCGAAGA GGCAAATTTTCTGCGAGAAGTGGAACTTCTTGTCTGTCATTGAGAAGTATCCTTCTATTTTCTACGTTGGTGGCGGTTCAGATAAAGCCCCACCTTTCGT CACACTGACGGAAAGAGCTGCAAAGATTGCGGGTGAAGAATCTGAAGCTAGAGCGTTGATGGAGCCAACTTTGGTCAGAAACTTGAGGAAGTTGTTAATG ATGTCAGTTGATTGCAGGGTGCCATTAGAAAAGGTTGAGCTCATTGGAAATGAGTTAGGCTTGCCTCTAGATTTCAGGGAGTCTTTGATTCCCAAATATC CGCATTTCTTTTCGGTGAAGGAAGATGTTAAGGGGAAACCTTGCCTGCGTTTAGAGCACTGGGATTCATCACTGGCAATGACTGTTCGTGAGGAAAGATT GGGTCTTGATGGAGTTCCACTCTCGAACCCATCTCGAAAGCTAGTTAGAATCTCAAGAGATGGAAATTACTTGGGACCATTTGCTTTCAAGATACAGTTT GCTGCTGGTTTCAGGCCGAATAACAGCTTCTTAGAGGAGCTTGAAAGGTGGCAGAGACTGGATTTTCCTTCTCCATACTTGAATCCCAGGACATTCGAGG CTGCTGATCCTAAGGCAAGGAAACGTGTCGTGTCAGTGCTCCACGAGCTTCTCAGTTTGACCATGGAGAAAAGATTGACATCATCACAGTTGGATGCGTT TCATTGTGAGTATTTGTTGCCGTCAAGGTTGCTGCTTTGTTTGATAAAGCATCATGGTCTTTTTTACATCACAAATAAAGGTGCAAGAAGTACAGTCTTC TTAAAGGAAGCATATGATGGCACTAATTTGATCACAAAGTGCCCGTTACTGTCACTCAATGATAAGTTTGTTGCTCTTAGCGGCCGTAGAGTGCTCAATT CTTGTAATTCAATGAGTTCCTATTCTTGA
AA sequence Show only first row Show all	>Lus10032172 pacid=23161135 polypeptide=Lus10032172 locus=Lus10032172.g ID=Lus10032172.BGIv1.0 annot-version=v1.0 MHRRQSSLRFYLCSKTYESPFPFQNSGSILVSKRQIFCEKWNFLSVIEKYPSIFYVGGGSDKAPPFVTLTERAAKIAGEESEARALMEPTLVRNLRKLLM MSVDCRVPLEKVELIGNELGLPLDFRESLIPKYPHFFSVKEDVKGKPCLRLEHWDSSLAMTVREERLGLDGVPLSNPSRKLVRISRDGNYLGPFAFKIQF AAGFRPNNSFLEELERWQRLDFPSPYLNPRTFEAADPKARKRVVSVLHELLSLTMEKRLTSSQLDAFHCEYLLPSRLLLCLIKHHGLFYITNKGARSTVF LKEAYDGTNLITKCPLLSLNDKFVALSGRRVLNSCNSMSSYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	0	1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10023710 [exp]	3.6	0.8621
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	6.5	0.8519
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10037387 [exp]	8.1	0.8141
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	9.9	0.8212
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	10.2	0.8349
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10039311 [exp]	17.0	0.7758
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10026937 [exp]	18.3	0.7764
AT2G34357			ARM repeat superfamily protein...		Lus10041231 [exp]	18.4	0.8349
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10029888 [exp]	19.1	0.8120
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	19.4	0.8235

Compare expression of checked genes

Lus10032172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.