Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38730 745 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 252 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09680 249 / 1e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 247 / 7e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 240 / 5e-70 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 234 / 6e-68 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G02150 231 / 9e-67 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G32630 226 / 7e-66 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G61400 223 / 2e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 219 / 3e-63 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014513 [exp] 608 / 0 AT5G38730 446 / 7e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 263 / 2e-78 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 263 / 3e-78 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 261 / 3e-76 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 233 / 4e-68 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034616 [exp] 234 / 7e-68 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 229 / 7e-66 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 228 / 1e-65 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 218 / 3e-61 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G108600 [exp] 914 / 0 AT5G38730 762 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 254 / 3e-76 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 249 / 3e-74 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 250 / 8e-74 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 243 / 4e-71 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 243 / 6e-71 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 234 / 5e-68 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.011G003700 [exp] 231 / 2e-67 AT1G11710 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 229 / 4e-65 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 223 / 1e-64 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032174 pacid=23161284 polypeptide=Lus10032174 locus=Lus10032174.g ID=Lus10032174.BGIv1.0 annot-version=v1.0 ATGGCAACTTCAGTTTCTCCTAGTTGTGAATCACGGTTAGTTCATAGTATATGTGCGGTAGTGATAAAGGGATGCTGGCCGAATCTCCTGAAACCGAAGA TCGACTTTAATCTCACTCCAAATACGGTTCAACAGGTACTCCTGCAACTCCATGACTATAGCTACAGTACTCCTTCTCTTCCATGGGCGTTGTTTAAGTG GATCGAGTCGTCCTTTCCCAACTATAAGCATTCTGTTCAATCATCCTGGACCATGATTCACATTTTAACCAAGCATAAAAACTTCAAGACTGCACACCAA CTGCTCGAGAAAATTGCTTGCAAGGATTTCTTGTCCAGCCCTTCCGTTTTAACTGCTTTAGTGAAGACTCATGATGACCCAGAGGCTAATTCCCACGTTT TGAGCTGGCTTGTGATAGTGTATGGGAATTCCAGGATGACTCATGAGGCAATGCAGGTTTTTGAACACATGAGGGCCAATGGCTTCAAGCCGCATTTGCA TGCCTGCACCGCGTTGTTAAATACTTTGGTCAAAGATAGGTTGACTGATACGGTTTGGAAAGTGCATAAGAAGATGGTTAAACTTGGTGTAGTTGCTAAT GTCCATGTGTTTAATGTCTTGATTCATGCTTGCTGCAAGTCTGGAGATGTGGAGAAGGCAGAGAATTTGTTGACTGAAATGGAATTGAAAGGTGTTTCTC CTGATCTTTTCACTTACAATACGCTTATTTCTTTGTATTGCAAAAAGGGGATGCACTATGAAGCTCTCTCTGTTCAAGGTAGGATGGATATGGCAGGGAT TGTTCCTGATATTGTTACTCATAATTCTCTGATTTATGCATTCAGCAGAGAAGGTAGAATGAGGGAAGCTATGAGGCTTTTTAAGGAAATTAAAGATGCG ATCCCCAACCATGTGACTTACACTACTTTGATAGATGGTTACTGCAGGGTCAATGACTTTGAAGCAGCCTTGAATTTGAAAGCTTCCATGGCTGATAAAG GGCTCTACCCGACAGTAGTCACTTACAATTCGATTCTTCGCAAGTTGTGCGAGGGAGGCAGGATAAGAGATGCGAATAAACTCTTGAGTGAGATGGGTGA AAGGAACGTTGAACCAGATAACATCACATGCAACACTTTGATTAATGCCTATTGTAAAATAGGAGATATGGCATCAGCTTTGAAAGTGAAAGATAAGATG ATGGAAGCTGGTCTGAAGCTAGACGTGTTTACCTACAAGGCATTAATCCATGGCTTTTGCAAGGCACGTGATATGAAATGTGCCAAAGAGTACTTATTCA GTATGCTTAATGCTGGTTTTTCTCCCAGCTTTTGTACATATTCGTGGCTTGTAGATGTTCACTGTGACCAGCAAAAGGAAGAGGCTATTATCGAATTTCC TGATGAATTCATCAGTAGAGGTCTCTGTGTGGATGTTTCGTTGTACAGGTGTCTAATAAGGAGGCTTTGTAGAAAGGGGAAGATCGATAGTGCTAAGAAA ATATTTGGTCTTATGAAAGAAAAAGGCATATCAGGGGATAGTGTGGTATACGTAAGTTTGGCATATGCACAATGGAAATCAGGGAACGTGAGTGCTGCGT CAGATCTGATGGATGAAATGTACAAGAACAGGCTGATGGCTACTCTGAAAATATATAGGAGCTTCAGTGCTTCTTATGCTGGTGACGACAAGATCTTATA TCTCTTCTGGAGTCATCTGGCTGACAGGCGCCTAATGTCGAAGAGCATACTGAGTGGTCTTCAGCAATGA
AA sequence Show only first row Show all	>Lus10032174 pacid=23161284 polypeptide=Lus10032174 locus=Lus10032174.g ID=Lus10032174.BGIv1.0 annot-version=v1.0 MATSVSPSCESRLVHSICAVVIKGCWPNLLKPKIDFNLTPNTVQQVLLQLHDYSYSTPSLPWALFKWIESSFPNYKHSVQSSWTMIHILTKHKNFKTAHQ LLEKIACKDFLSSPSVLTALVKTHDDPEANSHVLSWLVIVYGNSRMTHEAMQVFEHMRANGFKPHLHACTALLNTLVKDRLTDTVWKVHKKMVKLGVVAN VHVFNVLIHACCKSGDVEKAENLLTEMELKGVSPDLFTYNTLISLYCKKGMHYEALSVQGRMDMAGIVPDIVTHNSLIYAFSREGRMREAMRLFKEIKDA IPNHVTYTTLIDGYCRVNDFEAALNLKASMADKGLYPTVVTYNSILRKLCEGGRIRDANKLLSEMGERNVEPDNITCNTLINAYCKIGDMASALKVKDKM MEAGLKLDVFTYKALIHGFCKARDMKCAKEYLFSMLNAGFSPSFCTYSWLVDVHCDQQKEEAIIEFPDEFISRGLCVDVSLYRCLIRRLCRKGKIDSAKK IFGLMKEKGISGDSVVYVSLAYAQWKSGNVSAASDLMDEMYKNRLMATLKIYRSFSASYAGDDKILYLFWSHLADRRLMSKSILSGLQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	0	1
AT3G50430			unknown protein		Lus10022468 [exp]	3.0	0.8644
AT5G36930			Disease resistance protein (TI...		Lus10034697 [exp]	3.6	0.8344
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10024946 [exp]	5.4	0.8204
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	6.3	0.8651
AT1G42440			unknown protein		Lus10030752 [exp]	7.6	0.8678
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	9.5	0.8470
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10003382 [exp]	11.6	0.8112
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Lus10026725 [exp]	13.8	0.8536
					Lus10028270 [exp]	14.7	0.8122
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	15.0	0.8310

Compare expression of checked genes

Lus10032174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.