Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59970 176 / 8e-53 Matrixin family protein (.1) AT1G70170 175 / 4e-52 MMP matrix metalloproteinase (.1) AT1G24140 167 / 4e-49 Matrixin family protein (.1) AT4G16640 146 / 5e-41 Matrixin family protein (.1) AT2G45040 140 / 4e-39 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014512 [exp] 461 / 4e-165 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10035221 [exp] 209 / 4e-66 AT1G24140 216 / 1e-67 Matrixin family protein (.1) Lus10039464 [exp] 201 / 4e-63 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10005605 [exp] 197 / 2e-61 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10030662 [exp] 179 / 1e-53 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10028955 [exp] 142 / 2e-39 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10010719 [exp] 138 / 2e-38 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10004728 [exp] 138 / 5e-38 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10041294 [exp] 131 / 8e-36 AT1G59970 177 / 3e-53 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100400 [exp] 167 / 7e-50 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.008G027600 [exp] 167 / 1e-49 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.012G104600 [exp] 167 / 4e-49 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G033200 [exp] 160 / 6e-47 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.019G073800 [exp] 157 / 7e-46 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.008G027700 [exp] 155 / 3e-45 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.008G027500 [exp] 154 / 2e-44 AT1G59970 219 / 2e-69 Matrixin family protein (.1) Potri.015G103900 [exp] 154 / 4e-44 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.019G073700 [exp] 152 / 4e-44 AT1G59970 213 / 7e-67 Matrixin family protein (.1) Potri.008G027975 [exp] 152 / 8e-44 AT1G59970 216 / 4e-68 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10032175 pacid=23161251 polypeptide=Lus10032175 locus=Lus10032175.g ID=Lus10032175.BGIv1.0 annot-version=v1.0 ATGGCTTCCAAATCTTTCCTTTTCCTTCTCCTCCAGTTCATTTCCTTTTCCCCCCTGGTCGTATTCCCACACTCACACCATACCCATTACTCTATTTCAC ACCTGGACACCGCCGTCGGCACCAAACTCGGCGACCACGAACCCGCCGTCGCCGCAGTAAAGTCCTACCTCCGCCGGTACGGTTACATGCCCGCCACCGA CGACTTCACCACCGCCGACGACCAATTCGACTCCTCACTCGAATCCGCCCTCAAGGCATACCAATCCAACTTCAAGCTGATACCCACCGGCGAACTCGAC TCCGCCACCGCAAAAATGATGAAAGCCCCGCGCTGTGGGGTCCCCGACATCGTTAACGGCACCAACTGGATGTTCAACTCGCGGTCGCCGCCGAATAACC GCCGTTTCCGGACCACATCCCGGTACAATCTCTTCCCCGGGAACCCCAAATGGCCGGAGGATAAACGGAATTTTACATACGCGTTCCTCGCCGGGACTCC GGAGATGGCGAAGAAGCCTGTGGCGAGCGCGTTCAAGAAGTGGGAGTCAAAGTTCCGGTCGAGATTCTCGTTCGCCGGGACGGAGGATTACGGGTCGGCG GATATCAAGATCGGGTTCTACAGCGGGAACCATGGGGATGGCGGGTCGTTTGATGGGCCCGGTGGGGCTTTGGCCCATTCGAGTCAGCCAGGGACTGGTC TGCTGCATTTCGATGCGGAGGAGACGTGGGCCGTGGGCCCGGTTAAGAAGGCGTTTGACGTTGAAACGGTGGCGTTGCATGAGATCGGGCATATTTTGGG GCTGATGCATAGCTCTGTCCCGTCGGCGATTATGTATCCGGAGATCGGCGATGGTGTGACGAAGAGGTTGAGCAAGGATGATCTTCACGGCATCAGGGCT TTGTATAATATCTGA
AA sequence Show only first row Show all	>Lus10032175 pacid=23161251 polypeptide=Lus10032175 locus=Lus10032175.g ID=Lus10032175.BGIv1.0 annot-version=v1.0 MASKSFLFLLLQFISFSPLVVFPHSHHTHYSISHLDTAVGTKLGDHEPAVAAVKSYLRRYGYMPATDDFTTADDQFDSSLESALKAYQSNFKLIPTGELD SATAKMMKAPRCGVPDIVNGTNWMFNSRSPPNNRRFRTTSRYNLFPGNPKWPEDKRNFTYAFLAGTPEMAKKPVASAFKKWESKFRSRFSFAGTEDYGSA DIKIGFYSGNHGDGGSFDGPGGALAHSSQPGTGLLHFDAEETWAVGPVKKAFDVETVALHEIGHILGLMHSSVPSAIMYPEIGDGVTKRLSKDDLHGIRA LYNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59970			Matrixin family protein (.1)		Lus10032175 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10020865 [exp]	15.1	0.7317
AT4G40070			RING/U-box superfamily protein...		Lus10035931 [exp]	19.4	0.7316
AT3G03000			EF hand calcium-binding protei...		Lus10004539 [exp]	26.9	0.7236
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	30.8	0.7216
					Lus10011249 [exp]	35.1	0.7108
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	38.3	0.7155
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	39.8	0.7041
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	39.9	0.7150
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	40.5	0.7105
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	41.1	0.7140

Compare expression of checked genes

Lus10032175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.