Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14940 553 / 0 Major facilitator superfamily protein (.1) AT3G01350 528 / 0 Major facilitator superfamily protein (.1) AT1G22540 358 / 6e-117 Major facilitator superfamily protein (.1) AT1G72125 344 / 2e-111 Major facilitator superfamily protein (.1) AT1G72130 338 / 1e-109 Major facilitator superfamily protein (.1.2) AT1G72140 329 / 7e-106 Major facilitator superfamily protein (.1) AT1G22550 325 / 6e-104 Major facilitator superfamily protein (.1) AT1G72120 323 / 3e-103 Major facilitator superfamily protein (.1) AT3G54450 315 / 3e-100 Major facilitator superfamily protein (.1) AT2G37900 313 / 2e-99 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014510 [exp] 923 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10005603 [exp] 689 / 0 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10039465 [exp] 575 / 0 AT5G14940 489 / 1e-168 Major facilitator superfamily protein (.1) Lus10016932 [exp] 373 / 8e-120 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 354 / 4e-115 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 346 / 4e-112 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 309 / 9e-98 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 308 / 1e-97 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 309 / 2e-97 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068500 [exp] 626 / 0 AT5G14940 631 / 0.0 Major facilitator superfamily protein (.1) Potri.017G152800 [exp] 615 / 0 AT5G14940 645 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 364 / 4e-119 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 357 / 4e-116 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 355 / 2e-115 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 345 / 7e-112 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 342 / 1e-110 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 336 / 3e-108 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 335 / 6e-108 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 333 / 5e-107 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10032177 pacid=23161108 polypeptide=Lus10032177 locus=Lus10032177.g ID=Lus10032177.BGIv1.0 annot-version=v1.0 ATGGCAGGGGAGAAGAGAGCTAAGCCAGGCCTCAATAGAGCATGTTGCCTTCTAATCGTGATATCTGGGATGGAGAGGTTTGCATTCAAAGGAGTGGCGT CGAACCTGGTGACGTACCTGACAGATGTGGTGAAGATGAGCAATTCTGCAGCAGCGAAGACTGTGAACAACTGGTGTGGACTGACCTCCATGCTTCCTCT CCTCGTTGCTTCCCTTTCTGAATCCTATTGGGGACGTTGCTCCACTATCTTGGCCTGTTGTTTCCTCTACATTCTAGGACTGGTGGCACTGACATCAACA GCAATGGCGTGGGGAAGCTACACATCAGCCAGCATGAGCTACTCCTTCCTATTCGGCTCGCTATGCCTCATCTCCCTCGGCCAAGGAGGATACAACCCAT CTCTCCAAGCCTTCGGAGCAGAGCAGCTACCCGAAACAGAGGACGACGACGAAGATGACAACGAACTCCCTACGACAAACAAACCGAGCCTGAAGAGCAA GTTCTTCCAGTGGTGGTATTACGGCGTGTGCGCCGGAAGCCTGATGGGGGTGATGGTGATGTCCTACATCCAGGATAACGTTGGCTGGGTGCTGGGATTC GCTATCCCGACTTTGGCCATGGTGGCTTCCATGGCGCTGTTCTGCTTCGGGGGCTCCATTTACCGGTACAATCAGGACGAGGATACCCTATCCGATAGCC TCCCATTCCTCATTCGACTTTTTAAGGATGCTGCTAACAAGATTAAGGTTTGCAGGATCACGTTGTCCGCTCGTCACGATTCTGAGGCTGCTGAAATCGA GCTACAAGAGAAGCCACTCTGCACCGGCAAGCTATGCAATCCAAAACCCGCAGCAGAGATACAACAACCAATCAAGACAAACAAAAACAAGAAGACGAAA ACAAGCAATTTAGTGAAAAATTTCAGAACAGTGCTGAGACTGCTCCCAATTTGGGCAATGCTGCTAACCTTCGCGGTCATATTCCAACAGCCAGCCACGT TTTTCACCAAGCAAGGGATGACGATGGAGAGAAACATAACCAAATTCGCCATCCCTCCCGCCACGCTCCAGAGCTCGATCACGATCTCGATCCTCCTCCT CATGCCCCTCTATGACCGCACGCTGATCCCCTTGTCGCGAATCTTGACCCGTGACGAGAGAGGGATCACCGTGATGCAGAGGATGGGAATCGGAATGTTC CTGTCTATCGTCGCCATGGTCATCGCCGCCTTGGTCGAAACAAAGAGGTTGCAGATCAGTAAAGGAGTGGCGAGAGAGATGGGAATGTCTTTGTCAAATC ATACGGTACCGATGAAGATATACTGGCTGTTACCACAATACGTCCTGCTGGGGATTTCAGACATATTTACGGTGGTGGGGATGCAGGAGTTCTTCTACGG GGAAGTTCCGGTGAAGATGCGGACTTTGGGGATCGCCCTGTACACTAGCGTGTTCGGTGTCGGGAGCTTCATGAGCGCGATTCTGATATGTTTGGTTGAG TGGTTTGCGCGGTTGAGGAACGAGGAGAGCTGGTTTAGCGACGACATGAGGGAGGCTAGGCTGGATAAGTACTACTGGCTTCTGGCGATATTGAGCACAG GCAGCTTGGTCTTATATGTGATTCTGTGTAGGTTTTACAAGGGGAGTAAGAATGACGAGGATGATGCTTGTGATGGTGATGATAGTGACTGTCAGGTTGA GAAGCAGAAGGATGATCGTAATGGTGGTGGTGGAGCTGAGAATTGTGCTTAG
AA sequence Show only first row Show all	>Lus10032177 pacid=23161108 polypeptide=Lus10032177 locus=Lus10032177.g ID=Lus10032177.BGIv1.0 annot-version=v1.0 MAGEKRAKPGLNRACCLLIVISGMERFAFKGVASNLVTYLTDVVKMSNSAAAKTVNNWCGLTSMLPLLVASLSESYWGRCSTILACCFLYILGLVALTST AMAWGSYTSASMSYSFLFGSLCLISLGQGGYNPSLQAFGAEQLPETEDDDEDDNELPTTNKPSLKSKFFQWWYYGVCAGSLMGVMVMSYIQDNVGWVLGF AIPTLAMVASMALFCFGGSIYRYNQDEDTLSDSLPFLIRLFKDAANKIKVCRITLSARHDSEAAEIELQEKPLCTGKLCNPKPAAEIQQPIKTNKNKKTK TSNLVKNFRTVLRLLPIWAMLLTFAVIFQQPATFFTKQGMTMERNITKFAIPPATLQSSITISILLLMPLYDRTLIPLSRILTRDERGITVMQRMGIGMF LSIVAMVIAALVETKRLQISKGVAREMGMSLSNHTVPMKIYWLLPQYVLLGISDIFTVVGMQEFFYGEVPVKMRTLGIALYTSVFGVGSFMSAILICLVE WFARLRNEESWFSDDMREARLDKYYWLLAILSTGSLVLYVILCRFYKGSKNDEDDACDGDDSDCQVEKQKDDRNGGGGAENCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	1.0	0.9772
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	6.2	0.9536
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	6.9	0.9577
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	6.9	0.9362
AT3G52480			unknown protein		Lus10004203 [exp]	13.0	0.9447
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	13.9	0.9413
					Lus10011724 [exp]	17.8	0.9526
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	19.0	0.9381
AT3G55420			unknown protein		Lus10005165 [exp]	19.2	0.9132
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	19.7	0.9379

Compare expression of checked genes

Lus10032177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.