Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014508 [exp] 288 / 1e-101 ND / Lus10039454 [exp] 214 / 4e-72 AT1G24020 43 / 1e-05 MLP-like protein 423 (.1.2) Lus10015339 [exp] 208 / 7e-70 ND 41 / 6e-05 Lus10005608 [exp] 196 / 7e-65 ND / Lus10016840 [exp] 78 / 2e-18 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 77 / 2e-18 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10016839 [exp] 71 / 5e-16 ND / Lus10003187 [exp] 56 / 4e-10 AT5G45860 46 / 1e-06 regulatory components of ABA receptor 5, PYR1-like 11 (.1) Lus10030840 [exp] 45 / 2e-06 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G212100 [exp] 99 / 1e-26 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 91 / 2e-23 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 89 / 7e-23 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2) Potri.008G212300 [exp] 85 / 2e-21 AT1G24020 47 / 5e-07 MLP-like protein 423 (.1.2) Potri.004G021100 [exp] 85 / 3e-21 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.010G000600 [exp] 85 / 3e-21 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2) Potri.008G212400 [exp] 85 / 3e-21 ND / Potri.008G212500 [exp] 84 / 3e-21 AT1G24020 52 / 6e-09 MLP-like protein 423 (.1.2) Potri.014G152800 [exp] 81 / 6e-20 AT1G24020 54 / 1e-09 MLP-like protein 423 (.1.2) Potri.011G025966 [exp] 81 / 1e-19 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10032178 pacid=23161189 polypeptide=Lus10032178 locus=Lus10032178.g ID=Lus10032178.BGIv1.0 annot-version=v1.0 ATGGGTGTGACCACGGCAACCCACGAGTTCAAGTCGTCGATCCCGGCCGAGAGGATGTACAAAGCCTTGGTCCTCGAGAACTCGACCCTCTTCCCTAAGA TCATCCCTCAGTACAAGACCGAGTTCGTCCAAGGCGAAGGAGGTGTCGGTAGCATCAGCAAGACCTCCTTCCCCAACGAAGCAAATGAAGTGAAGACAGT GAAGCACCGGGTGGATGCTCATGACCCGGCTAACTACTACGGAAAGTACACTCTGATCGAAGGCGGTCCATTGAGCGAGAATAAGAACGTGGAATCGGTG GTGAACGAGGTCAAGATCGAGGCTGCGGGTGATGCTGGATGCGTTGTCAAGGCGATCAACCATTATCATGCTAAGGAAGGTGAAGCTGACAAGGCAATGA TTGAGAGCACTGGACAACAGACCATCGGTCTCTACAAGGCTGTCCAAGATTACCTCTTGGCTAACCCAACCATCTGCGCCTAA
AA sequence Show only first row Show all	>Lus10032178 pacid=23161189 polypeptide=Lus10032178 locus=Lus10032178.g ID=Lus10032178.BGIv1.0 annot-version=v1.0 MGVTTATHEFKSSIPAERMYKALVLENSTLFPKIIPQYKTEFVQGEGGVGSISKTSFPNEANEVKTVKHRVDAHDPANYYGKYTLIEGGPLSENKNVESV VNEVKIEAAGDAGCVVKAINHYHAKEGEADKAMIESTGQQTIGLYKAVQDYLLANPTICA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032178 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	1.0	0.9982
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	2.0	0.9960
					Lus10014508 [exp]	3.5	0.9949
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	3.5	0.9943
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	3.9	0.9950
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	5.7	0.9941
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	6.0	0.9938
					Lus10043316 [exp]	6.3	0.9934
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	6.7	0.9945
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	6.9	0.9914

Compare expression of checked genes

Lus10032178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.