Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14950 1239 / 0 GMII, ATGMII golgi alpha-mannosidase II (.1) AT5G13980 202 / 2e-53 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 194 / 5e-51 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 187 / 2e-48 Glycosyl hydrolase family 38 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014507 [exp] 1668 / 0 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 1511 / 0 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10039457 [exp] 1396 / 0 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10012578 [exp] 203 / 7e-54 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10035111 [exp] 180 / 3e-46 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10036074 [exp] 164 / 2e-41 AT5G13980 1372 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012577 [exp] 153 / 9e-38 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 119 / 6e-27 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10014259 [exp] 91 / 2e-18 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350400 [exp] 1350 / 0 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 1330 / 0 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.008G117400 [exp] 446 / 3e-150 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1) Potri.007G056300 [exp] 212 / 1e-56 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.012G106500 [exp] 194 / 6e-51 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.014G143600 [exp] 194 / 8e-51 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 189 / 2e-49 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10032179 pacid=23161308 polypeptide=Lus10032179 locus=Lus10032179.g ID=Lus10032179.BGIv1.0 annot-version=v1.0 ATGAATGACGAGGCGAATTCTCATTTCTTCTCAATAATTGAGCAGATTACCGAAGGGAACATGTGGTTGAATGACAACATTGGTGTTATTCCGAAGAATT CTTGGGCAATAGATCCCTTTGGTTATTCATCTACGATGGCATATCTTCTTCGTCGTATGGGGATTGAGAATATGCTAATTCAGAGGACTCATTATGAGCT TAAGAAGGAACTTGCTCTGCATAAAAAACTTGAGTTTGTATGGCGACAGAGCTGGGATGCAGGTGAAACAACTGATATTTTTGTGCATATGATGCCTTTC TATTCTTATGATATTCCCCATACTTGTGGGCCAGAACCTGCCATTTGTTGTCAGTTTGATTTTGCTCCAGTGCCTGGATTTTTCTATGAGCTATGCCCTT GGCGCCAGAACCCAGAAGATATTACTCCAGAAAATGTGCAAGAGAGGTCTCAACTCTTGCTAGATCAATTCAGGAAGAAGTCAGTCTTATACCGTACAAA TACTCTGCTTATTCCTCTTGGGGATGATTTCAGATATGTCAGTGTTGATGAAGCAGAGGCCCAATTTCATAATTACCAATTGTTGTTCGACCATATCAAT TCGAACCCTAGCCTAAATGCCGAAGCAAAGTTCGGCACTCTGGATGATTACTTCCAAGCACTACGTGAGGAGTCTGATAGAATAAACTACTCACTTCCTG GGGAAGTTGGATCTAGTCAGATAGGAGGATTTCCTTCTCTATCAGGGGACTTCTTTACTTATGCTGATAGGGAAAAGGACTATTGGAGTGGCTACTATGT TTCTAGGCCCTTTTTCAAGGCTGTTGATAGGGTTCTAGAGCGAACATTACGTGCTACAGAAATGATGCTGGCTCTATTTGTTGGCCATTGCCAAAGAATC AAGTGTGAGAAGCTTGTCACAGGATTCAGCTATAAGTTGACAGCTGCGAGGAGGAATTTAGCACTCTTTCAGCATCACGATGGGGTAACTGGGACAGCTA AGGATCATGTTGTTCAGGACTATGGAATTCGGATGCATACCTCTTTGGAAGACCTCCAGATTTTCATGTCTAGAGCTATTGAAGTACTTCTCGGCATGCA CTTTGAGAAACTTGATCTGAACCCTGCTAAGTTCGAGGTAGACCAAGGGCGGGCCGAAAACATTACACAACCAGTTCACAAGGCTTTGAGTCCTCGTGAA GGAACTGCACAATTAGTGGTTCTCTTTAACCCTACAGAGCAAATTAGAGAAGAGGTGGTAATGGTCGTTGTTAATAGACCATTTATAACCGTGTTGGACT CGAACTGGACTTGCGTTCAAAGCCAGGTTTCTCCTGAGCCGAGGCATGATAGTAGCAATGACTTCAGTGGCCGGCATCGGCTCCACTGGAAAGCTTCGGT TCCACCAATGGGACTGGAAACTTACTACATTGCCAATGGCTTTGTAGGATGTGAAAAGGCCAAACCTGCCAAACTAAAGTACTTCTCTTCAGCTTCATTC TCTTGCCCCAAACCGTATGCATGTTCTAAATTGAAAGGTGATTCGGCAGAAATCCACAACCACCAGCAGATTCTCAGCTTTGACCTTAAGGAAGGTTTAT TGCAGAAAATTAGACACAGCAATGGCTCCACCTATGTTGTGGCAGAAGAAATCGGTATGTATGCCAGTAACGGTAGTGGTGCATACTTGTTTAGACCACT TGGAGATGCTCAATCGATCATTCAAACCAATGGGCTTACTGTTATCACCGAAGGTCCGCTAATGGAAGAGCTCTTCTCATATCCGAAGACACCATACAAG AAAAATCCTGTCTCCCATAGTACTCGCCTTTACAACGGAGTTCGATACAAGACAGATATTGATAGCAGGAGGATATTCTATACTGATTTGAACGGCTTTC AGATTAGCCGCAGAGAAACGTATGATAAGATTCCATTACAAGGAAACTACTATCACATGCCTTCACTGGCTTTTCTACAAGGATCCAACTGTCAGAGATT CTCTGTTCATTCCAGACAGTCTCTTGGTGTGGCAAGTCCTGAAGATGGATGGTTAGAGATTATGGTTGACCGTCGTTTGCCAACTGACGATGGTCGTGGA CTCGGGCAAGGAGTGACGGATAATCGGCCGATGAACGTGGTCTTTCACTTGCTCCTCGAATCCAACATTTCGTCCGAATCGAAACCGGTCAGCAATCATC TTCCCTTAACCCCATCTCTGCTCTCTCATCGTATAGGGGAACACTTGAACTATCCTTTACATGCTTTCATTTCAAAGGAATCTGAGGAGTTATCTCTTCA GACACACGGCAGATCGTCCTCTCCTCTAAATGCTTCACTACCCTGTGACCTGCACATTGTGAACTTCAAAGTTGCTTGGCCAGCATTGTTCACCCGAGAC CTTGTTGGAGATTCTAGGTTTGTTAGCGATGCTAGGTTTGTTCTGATATTACAGAGATGGCATTCGGATGCTTCGTACTGCCGAAAGGGCCGGTCGCAAG AGTGCACAAGATTCGAGGATGATGGGTCCCTTAACATTTTCGAAATGTTCCATGGGTTTTTGATATCGAAAGCTGAAGCGACCTCTTTGAATCTGCTTCA TGACGACTATGAGATGCTGGGGTACTGTGAGCATGTCGGGGATGTATCTCTGGATGGGCGCATTTCCATCTCGCCGATGGAGATTCAAGCGTACAGGTTG GAGTTACTGCCCAACCGGGATGAAAGTAGCTGGAATGTCGATGAATCTGGATCCTGGGTTCTTCCGGAAATGAAGATGGGTTTGTGGAGCTTGGTGGGTA AGTAA
AA sequence Show only first row Show all	>Lus10032179 pacid=23161308 polypeptide=Lus10032179 locus=Lus10032179.g ID=Lus10032179.BGIv1.0 annot-version=v1.0 MNDEANSHFFSIIEQITEGNMWLNDNIGVIPKNSWAIDPFGYSSTMAYLLRRMGIENMLIQRTHYELKKELALHKKLEFVWRQSWDAGETTDIFVHMMPF YSYDIPHTCGPEPAICCQFDFAPVPGFFYELCPWRQNPEDITPENVQERSQLLLDQFRKKSVLYRTNTLLIPLGDDFRYVSVDEAEAQFHNYQLLFDHIN SNPSLNAEAKFGTLDDYFQALREESDRINYSLPGEVGSSQIGGFPSLSGDFFTYADREKDYWSGYYVSRPFFKAVDRVLERTLRATEMMLALFVGHCQRI KCEKLVTGFSYKLTAARRNLALFQHHDGVTGTAKDHVVQDYGIRMHTSLEDLQIFMSRAIEVLLGMHFEKLDLNPAKFEVDQGRAENITQPVHKALSPRE GTAQLVVLFNPTEQIREEVVMVVVNRPFITVLDSNWTCVQSQVSPEPRHDSSNDFSGRHRLHWKASVPPMGLETYYIANGFVGCEKAKPAKLKYFSSASF SCPKPYACSKLKGDSAEIHNHQQILSFDLKEGLLQKIRHSNGSTYVVAEEIGMYASNGSGAYLFRPLGDAQSIIQTNGLTVITEGPLMEELFSYPKTPYK KNPVSHSTRLYNGVRYKTDIDSRRIFYTDLNGFQISRRETYDKIPLQGNYYHMPSLAFLQGSNCQRFSVHSRQSLGVASPEDGWLEIMVDRRLPTDDGRG LGQGVTDNRPMNVVFHLLLESNISSESKPVSNHLPLTPSLLSHRIGEHLNYPLHAFISKESEELSLQTHGRSSSPLNASLPCDLHIVNFKVAWPALFTRD LVGDSRFVSDARFVLILQRWHSDASYCRKGRSQECTRFEDDGSLNIFEMFHGFLISKAEATSLNLLHDDYEMLGYCEHVGDVSLDGRISISPMEIQAYRL ELLPNRDESSWNVDESGSWVLPEMKMGLWSLVGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10032179 [exp]	0	1
AT1G15260			unknown protein		Lus10035880 [exp]	6.4	0.9205
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	7.9	0.9200
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10013222 [exp]	9.5	0.8499
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Lus10031099 [exp]	10.4	0.8733
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	11.4	0.9154
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	13.1	0.9024
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	14.3	0.9138
AT1G54820			Protein kinase superfamily pro...		Lus10004461 [exp]	15.4	0.8980
AT4G18540			unknown protein		Lus10036092 [exp]	15.5	0.9002
AT2G01510			Tetratricopeptide repeat (TPR)...		Lus10042198 [exp]	15.8	0.7954

Compare expression of checked genes

Lus10032179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.