Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14970 308 / 2e-103 unknown protein AT2G14910 157 / 1e-44 unknown protein AT1G63610 60 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014506 [exp] 617 / 0 AT5G14970 329 / 5e-111 unknown protein Lus10026601 [exp] 154 / 5e-43 AT2G14910 396 / 9e-137 unknown protein Lus10013888 [exp] 138 / 8e-37 AT2G14910 380 / 8e-130 unknown protein Lus10030753 [exp] 59 / 1e-09 AT1G63610 397 / 6e-139 unknown protein Lus10013233 [exp] 59 / 2e-09 AT1G63610 389 / 1e-135 unknown protein Lus10016008 [exp] 53 / 2e-07 AT1G63610 409 / 1e-143 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G092800 [exp] 155 / 5e-44 AT2G14910 421 / 9e-147 unknown protein Potri.001G298200 [exp] 150 / 4e-42 AT2G14910 419 / 1e-145 unknown protein Potri.005G250000 [exp] 58 / 3e-09 AT1G63610 441 / 7e-156 unknown protein Potri.002G011000 [exp] 54 / 5e-08 AT1G63610 431 / 3e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032180 pacid=23161137 polypeptide=Lus10032180 locus=Lus10032180.g ID=Lus10032180.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCACTGCTCGAGCTTTCCTCCTCTCTCGCCGCGTCACTGACCTCTCACCCAAACGCCACCAACCACCACAACCTCATCCTCCTTCGTCAA CGGCCTCCTCTTCCGTCTTCCCTCGCTTCGGCTTCCTCCTGCAGCGCCAGAATTCTCCCCACGCCGCCTTCGCCGTGACGACGGTCAGCTGTCTGAGCAG CGGCGGAGGGATCTCCGATGACTTTGTTGTCTCCACTCGGAAGTCTAGCTTGGACCGCGGTTTCTCCGTCATCGCCAACATGCTCCGGAAGATCGAGCCC CTCGATAACTCGGTCATTTCGAAAGGAGTTTCCGATTCCGCTAAGGATTCGATGAAGCAGACGATCTCGACGATGCTTGGCCTTCTGCCGTCTGATGATT TCTCCGTCGTGATTCGTTTCGGGAAGCATCCTCTCGACAGCCTCCTGATTTCCTCCATCATTACAGGATACACGCTGTGGAATGCGGAGTACAGGATGGC TTTGACGCGGAACTTGAATATTTCTATGGAGAACTGGAGAAAATTTGATTCTCAAGAACAGGAAGAAGAAACGCAGGAGGAAAGATACGTGAACGAGGGC CGAGGTGGTGAAGCTGGTCTCCAGGATGTCGAAATCAGTCCACAAGTGTTTGGGGATTTGCCGCCGGAGGCGTTGAGCTACATTCAACGCTTGCAATCTG AGTTATCTAACGTTAAAGAGGAACTTAAGTCATGGGAACAGCACATAACGGAAATGGGAAACGGCAAGGGAAATAAGAACGATTTATTAGAGTACCTGCG GTCACTTGATCCCCACATGGTAAAGGAGTTATCTCAACCATCTTCAAACGAGGTGGAGGACATCATTCACCAGCTTGTCCAAAACACAGTGCAAAAATTC TTGAAAGATGAATCAGCCTCAAGTTTCAATGGAGACCCGATCATCCCAAAAACAGGAAATAGTAAAAAAACTAGCGCCGATGAACTCAACACCACCATCG GCACTTCTCGTGATTACCTAGCAAAGCTTCTCTTCTGGTAG
AA sequence Show only first row Show all	>Lus10032180 pacid=23161137 polypeptide=Lus10032180 locus=Lus10032180.g ID=Lus10032180.BGIv1.0 annot-version=v1.0 MAATTARAFLLSRRVTDLSPKRHQPPQPHPPSSTASSSVFPRFGFLLQRQNSPHAAFAVTTVSCLSSGGGISDDFVVSTRKSSLDRGFSVIANMLRKIEP LDNSVISKGVSDSAKDSMKQTISTMLGLLPSDDFSVVIRFGKHPLDSLLISSIITGYTLWNAEYRMALTRNLNISMENWRKFDSQEQEEETQEERYVNEG RGGEAGLQDVEISPQVFGDLPPEALSYIQRLQSELSNVKEELKSWEQHITEMGNGKGNKNDLLEYLRSLDPHMVKELSQPSSNEVEDIIHQLVQNTVQKF LKDESASSFNGDPIIPKTGNSKKTSADELNTTIGTSRDYLAKLLFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14970			unknown protein		Lus10032180 [exp]	0	1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	37.5	0.8400
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	67.7	0.8711
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10011606 [exp]	71.9	0.8368
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	77.3	0.8654
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	79.0	0.8368
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	88.2	0.8308
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	95.0	0.8504
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10019788 [exp]	124.2	0.8330
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	127.9	0.8577
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10000115 [exp]	153.4	0.8413

Compare expression of checked genes

Lus10032180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.