Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15020 1311 / 0 SNL2 SIN3-like 2 (.1.2) AT3G01320 1285 / 0 SNL1 SIN3-like 1 (.1.2) AT1G70060 1069 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 1066 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT1G59890 412 / 5e-123 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 373 / 3e-109 SNL6 SIN3-like 6 (.1) AT1G24200 185 / 3e-53 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 168 / 9e-48 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G35610 114 / 5e-29 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G15030 115 / 5e-28 Paired amphipathic helix (PAH2) superfamily protein (.1), Paired amphipathic helix (PAH2) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014504 [exp] 1451 / 0 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10014505 [exp] 804 / 0 AT5G15020 449 / 2e-144 SIN3-like 2 (.1.2) Lus10013293 [exp] 798 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 785 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10029217 [exp] 740 / 0 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10010729 [exp] 739 / 0 AT1G70060 1191 / 0.0 SIN3-like 4 (.1) Lus10029218 [exp] 218 / 2e-62 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10030816 [exp] 131 / 9e-35 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 125 / 2e-32 AT1G70060 130 / 2e-35 SIN3-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350200 [exp] 1475 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.008G192200 [exp] 1177 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 835 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G316300 [exp] 93 / 3e-21 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 72 / 5e-15 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2) Potri.017G056201 [exp] 0 / 1 AT1G24190 0 / 1 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat PF08295 [flax] [poplar] Sin3_corepress Sin3 family co-repressor
Representative CDS sequence Show only first row Show all	>Lus10032181 pacid=23161289 polypeptide=Lus10032181 locus=Lus10032181.g ID=Lus10032181.BGIv1.0 annot-version=v1.0 ATGAAGAGAGTAAGGGAGGAGTTCTACGGCGGCGGAGGCGGCGGCTCTCAATTCAAACGAACTCATGGCTCCTCCTCATACGCACAACCCCCGATTCGAG GAGTTGGAGGAGGCGGCGGATTAGGAGGGCCAACAGTTGCAGCAGTTGGAGGAGTAGGGCCAGCTGGAGGAGGTGGTGGTGGGATGGGGGGAGCAGTTGT TGGTGCAGCCGGAAATGGAGTTGCCGCTGCAGCTAGTGGTGGAACCTCTCATAAACTTACAACAAGTGATGCCTTGGCCTACCTTAAGGAAGTGAAAGAT AAGTTTCAGGACCAGAAGGAAAAATATGATACGTTCCTTGAAGTCATGAAAGATTTTAAGGCTCAGAGAACTGACACTGCTGGTGTAATTGCACGGGTGA AAGAGTTGTTCAAAGGCCATAATAGTCTAATATATGGTTTTAATACCTTCATTCCAAAAGGTTATGAAATAGTCCTGGATGAAGATGAGGCTCCCCCAAA GAAGACAGTTGAATTTGAAGAAGCTATGAGCTTTGTCAATAAAATCAAGAAACGTTTCCAAAGTGATGAACATGTTTATAAGTCCTTCCTAGATACACTC AAGCTTTATCGGAAGGAGCACAAGGACATAAATGAGGTCTACAGAGAGGTTGCTGTTCTGTTCAAGGACCATCCAGATTTGCTTGATGAGTTCACTAGGT TCTTACCCGATACTTCAGGAACTGCTGTGTCCCAGCATGCTGCTAATGGTCCAGACACTGACCAGCGTTCTGCACAGCATACCCCTCCTACATCCACTTT GCGTCCAGTACACATAGATAAGCAACATCGGCGGGACAACGTTGCTACTTCTCACATTGAAAGCAATCGCAGTGTGGAGCAGCCTGGAATGGATGAGGAA AAACTGGTGTTAAAAACACAGAAGGAACAAAAGAAGCGAGCTGAGAAAGATAGCAGAGACAAGCGAAGCCATGATCAATCTGAGAGGGAACTTGATAATG ACAGCAACAGGCGGAAGCTTTCCCGGAAAGTTGAGGGTTCTGGAATCAGTTCGAACGCAGCTTCTCATGATGAGAAGGATGGCATAAAGAGCATGTATCA CGAGGGGGTTGTCTTCTGTGAGAAAGTGAAGGAGAAGTTGGGCAGTTCTGATGACTACCAGGCATTCTTGAAGTGCCTCAATATATTCAATAATGGAATA ATTAAGAAGAATGATTTACAAAATCTGATTACTGACTTGCTTGGAAAATACCCCGACCTCATGGAGGAATTCAATGATTTCCTACAACGTTGTGAGAATA TTGATGGGTTCCTTGCTGGTGTTATGAGTAAAAAATCACTAGTTAGTGGTGGACTCGCAGTAAGATCATTAAAAGTGGAGGAACGCGACAATGAACCAAA GCATGAACTTGATGCAGCTAAAGACCAGGAGAAATGCAATGAGAAGTATATGGACAAATCTATTCAAGAGCTCGACCTGTCTAACTGTCAACGTTGTACC CCCAGCTATCGGCTTCTTCCAGATGATTATCCAATACCTTTAGCAAGCCAGAAATCTGATCTTGGTTCTCAAGTGCTCAATGACCACTGGGTTTCTGTAA CTTCAGGAAGTGAAGATTACTCTTTTAAGCATATGCGTCGGAACCACTATGAAGAAAGCTTATTCAGATGTGAAGATGATCGGTTTGAGCTGGATATGCT GTTAGAAGCTGTTAGCTCAACGGCTAAGCGCGTGGAGGAGTTGGTGAATAACTTCAATGAAAATAAAATCGAGTCGCCAATTCAAATTGACGCACTTCTT ACTGCCCTGAATTTGAGGTGCATTGAGCGTTTGTATGGAGACCATGGTCTAGATGTGCTGGATATATTGCGCAAAAATCCTGCTATTGCTTTTCCCGTCA TACTAACTCGGTTGAAGCAGAAACAAGAAGAGTGGACTCACTGTCGCACAGATTTCAACAAGGTTTGGGCTGAAATATACACAAAAAATCACTACAAATC ACTGGATCACCGTAGCTTCTATTTCAAACAACAGGATTCAAAGAATTTGAGTTCAAGATCTTTGATTGCTGAGATTAAGGAATTGAAAGACAAGCAACCA AAGGAGGATGATGTTCTTCTTTCCTTTGCCGCTGGAAGAAGACAATCCATAGCTTCAAACTTGGAATATGAGTATTCTGATGTCAACATTCATGAAGACT TGCGTAAAATTGTACAGTATTCTTGTGAAGAAGTTTGCTCGACAAAAGAACAACTTAATAGAGTTATGCGGCTTTGGACTACATTTTTAGAGCTAATGCT GGGGGTTCATTCAAATTCCAAAGAATATCCTGGAGGTTGCGGAAAAGATGAGCATCTTCTTTCAAGTTGCACAACCACAGCCGTGACAGAAAATGGTGGA GATCCTGCTGGCAATGTTGCTGTAACAAATTCCAAATCCCCAGTACTGCAACCCGATGCTAGTGTTGATGAAAAACCTTCGCCTCAACTTTCGGCCACCC TAGCTACTGGAGATGAGTTTCCTAAAGAACTGAGCTGCGGTGACCTGGATCTTGTTTCTAAACTTAATGTAACTTCTAACACCAGGAGAGTAGAGAGAGA GCAGAAAAATTTAGACTTGAGTGAGAAAATGTCTGTACTTGACATACAGAGCGCCTGTCGCGTCGGAGTAGCTGATACCAGGGTATCACTTATGATTGGA TCAGAACAGATTAATGTTAAAAGCAACAATGATGGAACACCAGGTCACGGTAGTGGTTCTGTGATGGCCGTGTCCAGTACGGTTGCTAACATAGAATACA AAGCCGGTGCTGATGCTGGGCCGTCTGAAGAGACGGTAGTTGCTTTCAGAATCATTACATTTATTATTGCCCTCCAGGTTGGGACAGCAAACAGCGGGTC ATTTAACGATGACATGAAAGTTAATCAGAACCAGGTCAAATCCACTTCTCCTTCTAAAATTGAGAAGGAAGAGGGAGAGTTATCACCTAATGGTGAATTT GAAGACAACTTTGTTGCCTATGTACCGAAGAGTGTTGATCCAGTGGATAAAGTATCTGAAAATGCAGAAGAATTGCTTTGTCCAGATGGAGAAGTAGAAA TTGATGGTGAGGCAGATGTAGATGACGAGGACAGTGAAAATGCTTCCGAAGCTGCAGATGATGTATCGAGCAGTGAATCTGCAGGGGACGAGTGCTCCAG GGAAGAGCATGACGAGGATGAAGATCTGGAGCATGATGAAGTTGGTGGTAAGATCGAGAGTGACGGTGAAGCAGAGGGTATGACCACCAATGTCCATACT GGAGGTCTGCCCCTATCGGAGAGATTGTTTTTGTCTGTGAAGCCTCTTGCTAAGTATGTTCCAGCAAAATTGCTGGACATGGAAAGGAAAGATTCACGGG TTTTCTACGGGAATGATGATTTCTATCTGCTTTTCAGGCTTCATCAAATCCTTTATGAAAGAATCTTATCGGCGAAAATAAATTCCACCAGCAATGACAT GAAATGGAGAAGTTCCAACAATGATACTGCTGTGGATCCATATGCCAGGTTTATAACGGCTTTGTACAACCTGCTTGATGGATCTGCCGACAATGCGAAA TTTGAAGATGAATGCAGAGCCGTTTTCGGAAACCAATCATATCAGTTATTTACTCTGGACAAGTTGATATACAAAATTGTCAAGCAGCTACAGGTGGTTG CTGCCGATGAGATGGACAATAAGCTTCTTCAATTATACGAGTACGAGAGCTCGAGAAAAACTCGGAAGTCCATCGACTCTGTTTATTATGCTAACGTGCG TTATTTTCTGCACGAGGAGAATGTATATCGTTTAGTGTTCACATCTTCTCCATATCTAATGTCGATCCAGCTTATGGACAATGTTATGGAGAAGCCGGAT ATGCTGCCGGTCTCCATGGATCCTAATTTCGCAGCATATCTGCAGAAGGACTATCTGTCTGTTTCTCAAGGCAAAAGGGAGCCGCAGGGCGTTATACTTC ATAGAAACAAACACATGTATGATAAGATGGACGCACTCTCTGCGCATTGTGATGCAATGGAAGGTGTCAGCATGGTCAACGGTTTGGAGTGCAAGGTTGC TAGCAGTTACTACAAGATCCACTACGTTCTGGACACGGAAGATTTTTTCTACCGGTCTACTAGACGAAGGAAAACCTCAAGTGGTGGCCGATCTTCACAT CGTCGTGATTGGTTTCACAGACTCTTGCAGTCTTCAACATAA
AA sequence Show only first row Show all	>Lus10032181 pacid=23161289 polypeptide=Lus10032181 locus=Lus10032181.g ID=Lus10032181.BGIv1.0 annot-version=v1.0 MKRVREEFYGGGGGGSQFKRTHGSSSYAQPPIRGVGGGGGLGGPTVAAVGGVGPAGGGGGGMGGAVVGAAGNGVAAAASGGTSHKLTTSDALAYLKEVKD KFQDQKEKYDTFLEVMKDFKAQRTDTAGVIARVKELFKGHNSLIYGFNTFIPKGYEIVLDEDEAPPKKTVEFEEAMSFVNKIKKRFQSDEHVYKSFLDTL KLYRKEHKDINEVYREVAVLFKDHPDLLDEFTRFLPDTSGTAVSQHAANGPDTDQRSAQHTPPTSTLRPVHIDKQHRRDNVATSHIESNRSVEQPGMDEE KLVLKTQKEQKKRAEKDSRDKRSHDQSERELDNDSNRRKLSRKVEGSGISSNAASHDEKDGIKSMYHEGVVFCEKVKEKLGSSDDYQAFLKCLNIFNNGI IKKNDLQNLITDLLGKYPDLMEEFNDFLQRCENIDGFLAGVMSKKSLVSGGLAVRSLKVEERDNEPKHELDAAKDQEKCNEKYMDKSIQELDLSNCQRCT PSYRLLPDDYPIPLASQKSDLGSQVLNDHWVSVTSGSEDYSFKHMRRNHYEESLFRCEDDRFELDMLLEAVSSTAKRVEELVNNFNENKIESPIQIDALL TALNLRCIERLYGDHGLDVLDILRKNPAIAFPVILTRLKQKQEEWTHCRTDFNKVWAEIYTKNHYKSLDHRSFYFKQQDSKNLSSRSLIAEIKELKDKQP KEDDVLLSFAAGRRQSIASNLEYEYSDVNIHEDLRKIVQYSCEEVCSTKEQLNRVMRLWTTFLELMLGVHSNSKEYPGGCGKDEHLLSSCTTTAVTENGG DPAGNVAVTNSKSPVLQPDASVDEKPSPQLSATLATGDEFPKELSCGDLDLVSKLNVTSNTRRVEREQKNLDLSEKMSVLDIQSACRVGVADTRVSLMIG SEQINVKSNNDGTPGHGSGSVMAVSSTVANIEYKAGADAGPSEETVVAFRIITFIIALQVGTANSGSFNDDMKVNQNQVKSTSPSKIEKEEGELSPNGEF EDNFVAYVPKSVDPVDKVSENAEELLCPDGEVEIDGEADVDDEDSENASEAADDVSSSESAGDECSREEHDEDEDLEHDEVGGKIESDGEAEGMTTNVHT GGLPLSERLFLSVKPLAKYVPAKLLDMERKDSRVFYGNDDFYLLFRLHQILYERILSAKINSTSNDMKWRSSNNDTAVDPYARFITALYNLLDGSADNAK FEDECRAVFGNQSYQLFTLDKLIYKIVKQLQVVAADEMDNKLLQLYEYESSRKTRKSIDSVYYANVRYFLHEENVYRLVFTSSPYLMSIQLMDNVMEKPD MLPVSMDPNFAAYLQKDYLSVSQGKREPQGVILHRNKHMYDKMDALSAHCDAMEGVSMVNGLECKVASSYYKIHYVLDTEDFFYRSTRRRKTSSGGRSSH RRDWFHRLLQSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	0	1
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	1.0	0.9481
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	1.4	0.9456
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	1.7	0.9362
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	2.2	0.9314
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	2.6	0.9113
AT1G45231			S-adenosyl-L-methionine-depend...		Lus10009752 [exp]	3.3	0.9084
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	4.0	0.9333
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	5.2	0.9104
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	5.3	0.9066
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	5.8	0.9030

Compare expression of checked genes

Lus10032181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.