Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G28490 387 / 7e-136 Oxoglutarate/iron-dependent oxygenase (.1) AT5G18900 360 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G06300 346 / 1e-119 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT4G35810 265 / 4e-88 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G20270 262 / 8e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G17720 261 / 2e-86 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 258 / 3e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25600 219 / 5e-70 Oxoglutarate/iron-dependent oxygenase (.1) AT2G43080 200 / 1e-62 AT-P4H-1 P4H isoform 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014502 [exp] 520 / 0 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 360 / 5e-125 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 357 / 7e-124 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041857 [exp] 261 / 3e-86 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10028404 [exp] 261 / 3e-86 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032184 [exp] 255 / 3e-86 AT3G28480 206 / 2e-67 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10005620 [exp] 239 / 2e-77 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017249 [exp] 225 / 2e-71 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031048 [exp] 204 / 9e-65 AT2G43080 406 / 7e-145 P4H isoform 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075100 [exp] 464 / 4e-166 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.008G197700 [exp] 360 / 2e-125 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075300 [exp] 356 / 3e-124 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.005G108000 [exp] 266 / 2e-88 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 255 / 5e-84 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G060800 [exp] 251 / 3e-82 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.012G142800 [exp] 241 / 3e-78 AT4G25600 278 / 4e-93 Oxoglutarate/iron-dependent oxygenase (.1) Potri.002G232100 [exp] 205 / 1e-64 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.007G052600 [exp] 181 / 3e-55 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G091000 [exp] 180 / 6e-55 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0213 [flax] [poplar] ShK-like PF01549 [flax] [poplar] ShK ShK domain-like CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10032183 pacid=23161129 polypeptide=Lus10032183 locus=Lus10032183.g ID=Lus10032183.BGIv1.0 annot-version=v1.0 ATGGAGTTCCTGTCCGGCCTTCATTACCTAGGGCTTTCCCTCTGTTTCCTCTTGATTTCCCCCCGCCTTGCCCTCTCGGAAAAAATAGACAAGTCAGTGC TGAGGTTGAACAGAGGCTTGTTCTCAAAATCCTTTGATCCCACCCGCGTCATTCAACTCTCCTGGCATCCAAGGGCCTTTCTGTACAAAGGATTTCTGTC AGATGCGGAATGCGAGCACCTTAAGGACCTGGCGAGGGACTCGCTTGAGAAATCAATGGTGGCGGACAATGAATCGGGGAAGAGTATAGAGAGTGAAGTC AGAACAAGCTCTGGAACTTTTCTTAGTAAAGCACAGGATGAAGTGGTAGCTGCGATCGAACAGAGGATTGCTGCCTGGACTTTCCTTCCTGTAGAAAATG GAGAGGCGATTCAAATCCTACGCTATGAGCTTGGTCAGAAGTATGAGCCACATTTTGACTATTTCCATGACAAGGCTAATCAACAGCTCGGTGGACACCG GATTGCCACTGTGTTGATGTATCTATCAGATGTAGCCAAGGGTGGGGAAACCGTGTTTCCCAATGCAGAGGGGAAGGATTCTCAACCAAAGGCCGATGAC TGGTCTGATTGTGCAAAAGATGGTTATGCAGTGAAGCCTGAGAAGGGTGATGCTCTAATGTTCTTCAGTCTCCACCCTGATGCAACCACTGATCCAACCA GTCTGCACGGGAGTTGCCCCGTTATAGAGGGAGAGAAGTGGTCTGCAACAAAGTGGATCCACGTCAGGTCATTCGAGGAATCCATATCGCAACCAAGAGA AGGAGGTTGCAGCGACGAGAACGAGAACTGCGCGAAATGGGCCAAGGCAGGTGAGTGCGAGAAGAACCCGCAGTATATGGTTGGTTCTGATCAATTTTCG GGATACTGTAGGAAGAGTTGCCAGGTTTGCTCATCTTAG
AA sequence Show only first row Show all	>Lus10032183 pacid=23161129 polypeptide=Lus10032183 locus=Lus10032183.g ID=Lus10032183.BGIv1.0 annot-version=v1.0 MEFLSGLHYLGLSLCFLLISPRLALSEKIDKSVLRLNRGLFSKSFDPTRVIQLSWHPRAFLYKGFLSDAECEHLKDLARDSLEKSMVADNESGKSIESEV RTSSGTFLSKAQDEVVAAIEQRIAAWTFLPVENGEAIQILRYELGQKYEPHFDYFHDKANQQLGGHRIATVLMYLSDVAKGGETVFPNAEGKDSQPKADD WSDCAKDGYAVKPEKGDALMFFSLHPDATTDPTSLHGSCPVIEGEKWSATKWIHVRSFEESISQPREGGCSDENENCAKWAKAGECEKNPQYMVGSDQFS GYCRKSCQVCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032183 [exp]	0	1
AT4G16490			ARM repeat superfamily protein...		Lus10038811 [exp]	3.0	0.8282
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017540 [exp]	8.1	0.7986
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	11.5	0.7857
AT3G56820			unknown protein		Lus10012105 [exp]	13.5	0.8197
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	14.7	0.7907
AT5G08060			unknown protein		Lus10040513 [exp]	18.0	0.8194
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	25.4	0.7832
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	27.2	0.7876
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	29.4	0.7992
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	29.7	0.7871

Compare expression of checked genes

Lus10032183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.