Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40030 637 / 0 Protein kinase superfamily protein (.1) AT5G47750 572 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 555 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 540 / 0 D6PK D6 protein kinase (.1) AT2G44830 536 / 0 Protein kinase superfamily protein (.1) AT3G27580 528 / 0 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT3G12690 503 / 9e-174 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G79250 501 / 2e-173 AGC1.7 AGC kinase 1.7 (.1.2) AT1G16440 481 / 4e-166 RSH3 root hair specific 3 (.1) AT3G52890 493 / 2e-165 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014501 [exp] 937 / 0 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10039105 [exp] 575 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 572 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 565 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 549 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10022272 [exp] 545 / 0 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10022534 [exp] 491 / 3e-169 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10008634 [exp] 501 / 1e-168 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10035591 [exp] 501 / 2e-168 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G075400 [exp] 696 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 575 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 574 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.001G344600 [exp] 566 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.002G137700 [exp] 553 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 548 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 517 / 3e-179 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.010G175900 [exp] 516 / 7e-179 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 511 / 4e-173 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 507 / 2e-170 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032185 pacid=23161329 polypeptide=Lus10032185 locus=Lus10032185.g ID=Lus10032185.BGIv1.0 annot-version=v1.0 ATGACTGAACAAACGTTAAAGGCCGAGACTTGCGCCGCCGACGCCGAATCCGCCAGCTTTCGAGATCTCAGCTTGAGCACCACCAACAGTGTCAGTATCA GCTTATGTAGCACCAACAGCAATTTGAGCAATGTGAGCAGCGAGTTCAAGGACAGCAGTGGTAGGGCGCTCAGCAGCGCCGTCGAATCAATCAGCAGCAC CGTCGAATCAATCAACGAGGTCGCGGGGAGTTTCAGGAGCGTCTGCAATTCCAAGCCTCACAGAGGGAATAATGACGTCAGGTGGGATGCGATACAGAGT GTTGTTTTTGTAGATGGCGAGACGACGTTGGGTTTGGGGCATTTTAGGCTGCTGAGGAAACTGGGTTGTGGAGATATTGGGAGTGTGTACTTGGCTGAAT TGAGAGACACTGGATGCCTTTTTGCAATGAAGGTTATGGATAAAGGGATGTTGGCTGGGAGGAAGAAGCTGCTGAGAGCTCAAACTGAGAAGGAGATTTT GGGGTTGCTGGATCATCCCTTTTTGCCTACTCTGTATTCTCATTTTGAGACTGATAAGTTCTCTTGCCTCTTGATGGAGTTCTGCAGTGGTGGGGATCTT CACATGCTCCGCCAGCGCCAGCCTGGCAAGCATTTCACTGAGCACGCTGCAAGGTTCTATGCTTCACAAGTGCTTCTTGCAATGGAGTATCTCCACATGA TGGGAGTTGTTTACAGAGATTTAAAGCCAGAAAATGTACTAGTAAGAGAAGATGGCCATATCATGCTTTCGGATTTCGATCTATCATTAAGATGCTGTGT CAACCCAACTCTAGTTCAGTCCAGCGTCGATCCATCATCTCGAATCTCATCGTACTGCATCCAGCCATCCTGCATCGATCCGGCCTGTAGGTTACCCGTC TGTGTGGAACCCTCGTGTTTAGTACAGCCATCTTGCTTCAAGCCACGCCTCAAAAAGAGCAGCTCCAAAAGTGTGAAGAAGACGAAAAGTGATAACAAAA AGCTCCATCACTTGTCAAGCTCATCAGATTCCCTCCCTGTACTTGTTGTTGAGCCAACCACTGCACGGTCCATGTCGTTCGTGGGGACCCACGAGTATTT AGCTCCCGAGATAATAAGAGGGGACGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGTATCTTCTTGTACGAGTTGTTATTCAGCAAGACACCATTC AAAGGAAACGGTAATGGTGAAACTCTATGCAATGTGGTTGGCCAACCTCTGAAGTTTCCTGAAGGAACATCTGTCAGTTTCGCAGCTAAGGATCTGATCC GAGGTCTCCTTGTTAAGGATCCTCAGAAGAGATTAGGTTTCAAGAAAGGAGCTACGGAAATTAAGCAGCATCCGTTTTTCGAAACTGTGAATTGGGCTCT GATTCGTAGCACTCAGCCTCCTGAAGTTCCTAAACCAGTCGATATGTTGATTTTGAATCATCCAAGTCCTCCTCCAACCAAGCAGCAGCCATTAGTACCA ACAAACTTGGAGGGTTGTAATAATAAGGTTAATAACAACAACAACAACAACAACAACAACAACAAGGGAGGTTCTGCTTCTGCTGATTCAGACAGAAGCT CTGGGCCTTACTTGGATTTTGAGTTCTTCTGA
AA sequence Show only first row Show all	>Lus10032185 pacid=23161329 polypeptide=Lus10032185 locus=Lus10032185.g ID=Lus10032185.BGIv1.0 annot-version=v1.0 MTEQTLKAETCAADAESASFRDLSLSTTNSVSISLCSTNSNLSNVSSEFKDSSGRALSSAVESISSTVESINEVAGSFRSVCNSKPHRGNNDVRWDAIQS VVFVDGETTLGLGHFRLLRKLGCGDIGSVYLAELRDTGCLFAMKVMDKGMLAGRKKLLRAQTEKEILGLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDL HMLRQRQPGKHFTEHAARFYASQVLLAMEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLRCCVNPTLVQSSVDPSSRISSYCIQPSCIDPACRLPV CVEPSCLVQPSCFKPRLKKSSSKSVKKTKSDNKKLHHLSSSSDSLPVLVVEPTTARSMSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLFSKTPF KGNGNGETLCNVVGQPLKFPEGTSVSFAAKDLIRGLLVKDPQKRLGFKKGATEIKQHPFFETVNWALIRSTQPPEVPKPVDMLILNHPSPPPTKQQPLVP TNLEGCNNKVNNNNNNNNNNNKGGSASADSDRSSGPYLDFEFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	0	1
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	2.0	0.9745
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	2.0	0.9751
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10017669 [exp]	4.7	0.9438
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	4.9	0.9681
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	6.2	0.9405
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	6.3	0.9575
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	6.7	0.9557
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	6.9	0.9510
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	7.0	0.9510
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	7.5	0.9507

Compare expression of checked genes

Lus10032185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.