Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73160 614 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT4G19460 443 / 7e-152 UDP-Glycosyltransferase superfamily protein (.1) AT5G59070 367 / 2e-122 UDP-Glycosyltransferase superfamily protein (.1) AT3G45100 52 / 5e-07 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G01220 50 / 3e-06 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014499 [exp] 912 / 0 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10034760 [exp] 480 / 3e-166 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 475 / 1e-164 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016475 [exp] 381 / 4e-128 AT5G59070 602 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040757 [exp] 384 / 3e-126 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024892 [exp] 54 / 2e-07 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022925 [exp] 54 / 2e-07 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097000 [exp] 690 / 0 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 494 / 3e-172 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G105500 [exp] 480 / 5e-167 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G038400 [exp] 390 / 2e-131 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G130000 [exp] 53 / 2e-07 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10032187 pacid=23161060 polypeptide=Lus10032187 locus=Lus10032187.g ID=Lus10032187.BGIv1.0 annot-version=v1.0 ATGGGATGGAAACTCAAAAACCACAATTCTTCCAGACCCAATTACCCAATTCATCTAACAAATTACTCCACAATCCTCACTTTCGTAGCCTTTCTCTTCA CTTCCCTTTTCCTACTCATCCGATTCCTAAACCTCTCCCAAGAACAACAACCGTTCGCCGGAGACCTCCGAGACGCCGATTTCCCCTGGAACAAGCTCTG CTTCGGCAACAGCGGCTCCTCCGAGAAGCTAAAAATCGCCGTATTCTCAAAATCATGGCCGATCGGAGCTTCACCGGGAGGAATGGAACGCCATGCGGCG ACTCTCTACACCGCGTTAGCAAAAAAGGGACACGAGATCCACGTCTTCACCGTTCCCTCAGACCGTAGGCCCCACCGCGAAATCCACGGGGCCAACCTCC ATGTGTACTTCGCGGCCAACGAGCACGGCTCGGTCAACAACTCGCGGGCGTACGAGATTTTCAAATCGGTCGACGCCGTGTCGCCGCCGTTTGACTACGT GCACAGCGAGAGCGTGTCCCTGCCGCACTGGAGGGCGAAGGCGGTGCCGAATCTGGCGGTGACGTGGCACGGGATATGGTACGAGATCATGCACTCGAAG CTGTTCGAGGAGCTGTTCACGAACCCAAACGGAGGAGGAGAAGGAGGAGGAGAAGAGATACCGTTGACGGCGGAGTTGCAGGAGGCGATGCCGAGGCTGT TGGATGAGATTAGGTTTTTCAGGAGCTATAAGCAGCATATTTGTATCAGTAACAGCGCCGGAGAGGCTTTGGTGAAGGTTTATCAGATGGATCGGAGGAA TGTTCATGTGATTCTGAACGGAGTTGATGATTCTCAGTTCGTTCATGATCCCAAAGCAGGGGAAGTTTTCCGGGAGCGATACGGAATTCCAGGAAATGCG ACAATTGTAATGGGAGTGGCAGGGCGGCTAGTTAGGGACAAAGGCCATCCAATCCTCTATGAGGCACTCTCCTCGATGCTCGCGCGACATTCACGAGTGT GCCTCGTGGTCGCAGGATCAGGCCCTTGGGGGCGTCGCTACGCTGAATTAGGTCCAAACGTGAAGGTATTAGGCCCCCTGGAACCGTCTCAGCTTTCACA ATTCTACAACGCGATCGACGTGTTTGTGAACCCTACGATGAGGCCTCAGGGGCTTGATTTGACATTGATCGAAGCCATGCATTGCGGGAAGCCCGTTTTA ACTCCCAACTACCCCAGCATTGTGGGGACGGTGGTGGTTGACCAGCGGTACGGCTACACTTTCTCGCCGAATGTGAAGTCGTTGGTTCGGGCTTTGGAGG AGGTGATCGCGGACGGGTCTCGGGTGCTGCAGAGGAAAGGCATGGCGTGCAAGAGTTATGTGAGTTCGATGTTTACTGCTGCGAAAATGGCGTCGGCTTA CGAAAGGTTCTTCCTTTGTATGAAGAATAATAGATACTGTCACTACCCTCTTCCCACAGATCACTGCTGA
AA sequence Show only first row Show all	>Lus10032187 pacid=23161060 polypeptide=Lus10032187 locus=Lus10032187.g ID=Lus10032187.BGIv1.0 annot-version=v1.0 MGWKLKNHNSSRPNYPIHLTNYSTILTFVAFLFTSLFLLIRFLNLSQEQQPFAGDLRDADFPWNKLCFGNSGSSEKLKIAVFSKSWPIGASPGGMERHAA TLYTALAKKGHEIHVFTVPSDRRPHREIHGANLHVYFAANEHGSVNNSRAYEIFKSVDAVSPPFDYVHSESVSLPHWRAKAVPNLAVTWHGIWYEIMHSK LFEELFTNPNGGGEGGGEEIPLTAELQEAMPRLLDEIRFFRSYKQHICISNSAGEALVKVYQMDRRNVHVILNGVDDSQFVHDPKAGEVFRERYGIPGNA TIVMGVAGRLVRDKGHPILYEALSSMLARHSRVCLVVAGSGPWGRRYAELGPNVKVLGPLEPSQLSQFYNAIDVFVNPTMRPQGLDLTLIEAMHCGKPVL TPNYPSIVGTVVVDQRYGYTFSPNVKSLVRALEEVIADGSRVLQRKGMACKSYVSSMFTAAKMASAYERFFLCMKNNRYCHYPLPTDHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	0	1
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	2.0	0.9658
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10015826 [exp]	3.2	0.9652
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	3.9	0.9538
AT2G32235			unknown protein		Lus10013126 [exp]	4.0	0.9491
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	4.9	0.9604
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	5.3	0.9566
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	6.2	0.9473
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	7.1	0.9378
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	7.3	0.9508
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	7.3	0.9481

Compare expression of checked genes

Lus10032187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.