Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15050 231 / 7e-75 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 198 / 7e-62 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 166 / 1e-49 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G53100 165 / 4e-49 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 162 / 3e-48 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 152 / 4e-44 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 147 / 6e-43 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT2G37585 141 / 2e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G03690 138 / 3e-39 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 113 / 9e-30 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032189 [exp] 346 / 1e-119 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 342 / 7e-118 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 173 / 4e-52 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 172 / 6e-52 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10030084 [exp] 160 / 3e-47 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 158 / 2e-46 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10031626 [exp] 154 / 1e-44 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 153 / 1e-44 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10020316 [exp] 151 / 8e-44 AT3G03690 457 / 1e-160 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130300 [exp] 255 / 3e-84 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 236 / 2e-76 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 176 / 2e-53 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 170 / 5e-51 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 158 / 2e-46 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.019G104600 [exp] 152 / 5e-44 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 152 / 6e-44 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.013G066200 [exp] 142 / 1e-40 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 139 / 6e-39 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 115 / 2e-30 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10032190 pacid=23161279 polypeptide=Lus10032190 locus=Lus10032190.g ID=Lus10032190.BGIv1.0 annot-version=v1.0 ATGAAGCGGCTGAAGAACTACTACATGCATTTCCGGCACCACCACCAGGCGGCGGATAGGCGGCGCTGGATCTTCCCTCTTGCAATTGGCTCAATATTCT CTCTCTTTCTCCTCTTCCTAACTACTACCGTCTATTCCCCTGCCGGTGTCCCAATCTTCCCCTTCTACCGCACAATGTACTCATCCTTCAGCTCCAAATT CGTCGAGACCAAGCTGCAGCCCATCCCGCTCTCCGATCTCCCTCCGCCGCCGCGATTCGCCTACTTGATCTCCGGCTCCAAGGGCGACGGCGACATGCTC AAGCGAACCCTACTTGCTCTCTACCACCCTAATAACCGCTACGTGGTGCATTTGGACGCCGAGTCCTCCCCTGACGAGCGGACGGATCTGGCCGATTTCG TGAGGGACCATAGGGTTTTTGTCAAGTTCGGGAATGTGAAGATGATTGCCAAGGCTAACCTCGTCACTTACAGAGGTCCCACCATGGTTGCCAATACGCT TCACGCTGCGGCGATCTTGCTGAGGGAAGGATCCGATTGGGATTGGTTCATTAACCTCAGTGCTTCCGACTACCCGCTCGTGACTCAGGACGGTGAGATT TTTTAA
AA sequence Show only first row Show all	>Lus10032190 pacid=23161279 polypeptide=Lus10032190 locus=Lus10032190.g ID=Lus10032190.BGIv1.0 annot-version=v1.0 MKRLKNYYMHFRHHHQAADRRRWIFPLAIGSIFSLFLLFLTTTVYSPAGVPIFPFYRTMYSSFSSKFVETKLQPIPLSDLPPPPRFAYLISGSKGDGDML KRTLLALYHPNNRYVVHLDAESSPDERTDLADFVRDHRVFVKFGNVKMIAKANLVTYRGPTMVANTLHAAAILLREGSDWDWFINLSASDYPLVTQDGEI F

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	0	1
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	1.0	0.9696
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	1.4	0.9642
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	3.9	0.9311
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	4.6	0.9351
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	5.7	0.9316
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10014495 [exp]	7.7	0.9159
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	7.7	0.9308
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10042925 [exp]	7.9	0.9280
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	9.2	0.9212
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	10.5	0.9038

Compare expression of checked genes

Lus10032190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.