Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15070 1442 / 0 Phosphoglycerate mutase-like family protein (.1.2) AT3G01310 1427 / 0 Phosphoglycerate mutase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015343 [exp] 1500 / 0 AT3G01310 1726 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10008307 [exp] 1426 / 0 AT5G15070 1662 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Lus10005263 [exp] 1372 / 0 AT5G15070 1377 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129900 [exp] 1558 / 0 AT5G15070 1761 / 0.0 Phosphoglycerate mutase-like family protein (.1.2) Potri.017G076400 [exp] 1535 / 0 AT5G15070 1745 / 0.0 Phosphoglycerate mutase-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00328 [flax] [poplar] His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence Show only first row Show all	>Lus10032191 pacid=23161062 polypeptide=Lus10032191 locus=Lus10032191.g ID=Lus10032191.BGIv1.0 annot-version=v1.0 ATGAGTGATACGGCGGTGGAAGGAGGAGGAGGAGATGGTGGTGGCGGAGGAGTGGCGATGACTAAGATTAAGATTGGAGTCTGTGTGATGGAAAAGAAGG TGAAATGCGGATTCGAGTGCGGGTTTGGCTTCATTAGGACCGAGTTTAGTGGATTTGGAAGTTTGTATGTTGCTAAGCTGACTGTTGGTGAATTGATGCG TTCCTTATTCGCGGATATTCTGAGTAGCTTTTTGTGTGTGGCTCTGCAGGTTATACAGTTTGGAGATAAAGTTATTCTTGAAGATCCAGTTGAGAGGTGG CCTATATGTGACTGTTTGATTGCCTTCTACTCCAGTGGTTATCCTCTTGAAAAGGCAGAGGCGTATGCTGCTTTAAGAAAGCCTTTCCTTATAAATGAAT TGGACCCTCAACATTTACTTCTTGATCGAAGGAAGGTATATGAGGTTGGAAACCGTTCCAGTGAGTTCCATCCAGAGGTAAGAAGAGTAAGGCGTGAAGG ATCTTACATATATGAAGAATTCATGCCTACTGGTGGAACAGATGTCAAGGTTTATACAGTGGGCCCTGAATATGCACATGCCGAGGCAAGGAAGTCTCCA GTTGTTGATGGTGTTGTCATGAGAAACCCAGATGGCAAAGAGGTGAGATATCCAGTATTGTTGACACCTAATGAGAAGCAAATATCTCGAGACGTTTGTC ATGCTTTTAGGCAAGCGGTGTGTGGATTTGATCTTCTGCGTTGTGAAGGACGCTCATATGTTTGTGATGTTAATGGGTGGAGTTTTGTGAAGAATTCTTA CAAATACTACGATGATGCTGCTTGTGTTTTGAGGAAGCTTTTTCTAGATGCTAAAGCCCCTCATTTATCAACGGAAATTCCACCTACATTACCATGGAAA GTAAATGAACCAGCTCAACCTACTGAAGGACTTACTCGGCAAGGAAGTGGAATTATTGGCTCATTTGAGCAGTCTGAGGAGCTACGCTGTGTCATTGCTA TTGTCCGGCATGGTGACAGAACTCCCAAGCAAAAGGTGAAGTTGAAGGTCACTGAGGAAAATCTGTTGAATTTGATGTTAAAGTATAATGGGGGAAGACC AAGAGCTGAGACAAAACTGAAAAGTGCTATTCAGTTACAAGACTTGTTGGATGCCACACGGATGCTGGTCCCTCGTAGTAGACCAGGTCGAGAAAGCGAC AATGAGGCAGAAGATGTCGAGCATGCTGAAAAACTACGCCAAGTTAAAGCAGTGCTTGAGGAGAAAGGGCATTTCTCTGGTATTTACAGGAAAGTCCAAT TAAAGCCTCTGAAGTGGATCAAAGTTCCAAAGAGTAATGGTGAAGGAGAGGAGGATCGACCAGTTGAAGCCTTGATGGTTCTCAAGTATGGGGGTGTGCT TACCCATGCTGGCAGAAAGCAGGCAGAAGAATTGGGTAGATATTTCCGAAATAATATGTATCCAGGAGAAGGTACAGGGCTCCTCCGTCTACACAGTACA TATCGTCATGATCTTAAGATTTACAGCTCTGATGAGGGTCGGGTACAGATGTCTGCTGCCGCTTTCGCAAAAGGGCTTCTTGATTTGGAAGGCCAGCTAA CTCCAATACTGGTTTCCCTGGTTAGCAAGGATTCCTCCATGTTGGATGGACTTGATCATGCTAGCATTGAGATGGAAGAAGCTAAGGCTAGGCTGAATGA GATAATCACTTCAAGTGTAAAGACTACTAGTAGCAATGTATCATCGGACTGTCCGTGGATGACGGATGGAGCTGGACTTCCCTCAAATGCATCTGAACTT CTCCAAAATCTGGAAAAACTGACTAAGACAGTAACCGAACAAGTCAGATTGCTAGCCAAAGATGAAGATGAAGAACTTACTGAGACAAGCACACACGATA TTGTTCTCCCATATGACCAAGCAAAGGCCCTTGGTAAAACAAACATTGATGTCGATCGAATTGCTGCTGGTTTACCCTGTGGTAGTGAAGGATTCTTGTT GATGTATGCACGCTGGAGGAAACTTGAGAAGGATTTGTATAATGAGCGTAAAGAGCGGTTTGACACTACTCAAATTCCTGATATTTATGACTCCTGCAAA TATGATCTCTTGCACAATGCTCATCTTAATCTAGAAGGACTGGATGAACTCTTTAAAGTTTCTCAGTTGCTTGCAGATGGAGTGATCCCAAATGAGTATG GTATCAATCCAAAGCAGAAACTGAAGATTGGTTCGAAGATTGCACGTCGATTACTGGGGAAGATCTTGATTGACCTGAGGAATACTCGCGAGGAGGCCAT TAATGTGGCTGAACTAAAGAGTAGTCAAGACCAAGAGTCGAATTCCACAGAGACTGAAAAGGCGAATTCTGATTATCAACCAAAGCTTCATAGCAGAAGT GAAGACACTAGAAGAACTAGCACAGCAAGTGAAATTTCAATTGACCAGGATGACGATGACGACACACAATACCGTCTGGATCCAAAGTACGCAAATGTGA AGACGCCCGAACGCCATGTTAGAACAAGGCTATACTTCACTTCTGAGTCGCATATACATTCACTTATGAACGTTCTCCGTTACTGCAACCTTGATGAGTC TCTCCAAGGTGAAGATAGTCTGCTCTGCTATAGCGCCTTGGAGAGGATGCACAATACCAAGGAGCTCGACTACATGAGCCACATTGTGTTACGAATGTTT GAGAATACCGAGGCAAGTAGCATCCGACTTTTCTTTTTCAAATCATCTGCAATTCGTTGCGGTTTTCGAATCATCCCTCAGGTTGAGTTAGAAGACCCAA AGAGGTTCCGGATAGAAATGACATTTAGCCGCGGTGCAGATTTATCGCCATTGGAAGTAGGAAATGACGTGGAGGCGACCTCCTTGCATCGGGAGCATAC GCTGCCGATAATGGGACCGGAACGGCTACAGGAGGGGGGGGGATCGTATCTGACATTGGAGAAGATGGAGAAGATGGTTCGTCCGTTTGCAATGCCGGCA GAAGATTTCCCGCCGCCGGCTACTCCAGCTGGTTTCTCAGGCTACTTCTCCAAAAGCGCCGCTGTGCTGGAGCGCCTGGTTAATCTCTGGCGGTCCAACA ACAAAGAGAAACACGGCACTTCTAACGGCAAGTGA
AA sequence Show only first row Show all	>Lus10032191 pacid=23161062 polypeptide=Lus10032191 locus=Lus10032191.g ID=Lus10032191.BGIv1.0 annot-version=v1.0 MSDTAVEGGGGDGGGGGVAMTKIKIGVCVMEKKVKCGFECGFGFIRTEFSGFGSLYVAKLTVGELMRSLFADILSSFLCVALQVIQFGDKVILEDPVERW PICDCLIAFYSSGYPLEKAEAYAALRKPFLINELDPQHLLLDRRKVYEVGNRSSEFHPEVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP VVDGVVMRNPDGKEVRYPVLLTPNEKQISRDVCHAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKLFLDAKAPHLSTEIPPTLPWK VNEPAQPTEGLTRQGSGIIGSFEQSEELRCVIAIVRHGDRTPKQKVKLKVTEENLLNLMLKYNGGRPRAETKLKSAIQLQDLLDATRMLVPRSRPGRESD NEAEDVEHAEKLRQVKAVLEEKGHFSGIYRKVQLKPLKWIKVPKSNGEGEEDRPVEALMVLKYGGVLTHAGRKQAEELGRYFRNNMYPGEGTGLLRLHST YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDHASIEMEEAKARLNEIITSSVKTTSSNVSSDCPWMTDGAGLPSNASEL LQNLEKLTKTVTEQVRLLAKDEDEELTETSTHDIVLPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLEKDLYNERKERFDTTQIPDIYDSCK YDLLHNAHLNLEGLDELFKVSQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKILIDLRNTREEAINVAELKSSQDQESNSTETEKANSDYQPKLHSRS EDTRRTSTASEISIDQDDDDDTQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLLCYSALERMHNTKELDYMSHIVLRMF ENTEASSIRLFFFKSSAIRCGFRIIPQVELEDPKRFRIEMTFSRGADLSPLEVGNDVEATSLHREHTLPIMGPERLQEGGGSYLTLEKMEKMVRPFAMPA EDFPPPATPAGFSGYFSKSAAVLERLVNLWRSNNKEKHGTSNGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15070			Phosphoglycerate mutase-like f...		Lus10032191 [exp]	0	1
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	2.0	0.8263
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	9.3	0.8216
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	26.5	0.7704
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10003686 [exp]	38.7	0.8016
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10023865 [exp]	41.6	0.7868
AT5G63120			P-loop containing nucleoside t...		Lus10019484 [exp]	53.0	0.7459
AT5G27920			F-box family protein (.1)		Lus10029870 [exp]	62.4	0.7827
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	97.9	0.7665
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10005913 [exp]	185.6	0.7317
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	191.3	0.7310

Compare expression of checked genes

Lus10032191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.