Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12110 427 / 4e-152 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 421 / 2e-149 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 386 / 8e-136 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT1G07420 195 / 3e-61 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 182 / 3e-56 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G14290 47 / 4e-06 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 46 / 1e-05 SBH1 sphingoid base hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024555 [exp] 496 / 2e-179 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004321 [exp] 396 / 4e-140 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004322 [exp] 348 / 1e-120 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 343 / 3e-119 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10028908 [exp] 266 / 2e-88 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10016492 [exp] 188 / 5e-58 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10001556 [exp] 187 / 7e-58 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 186 / 2e-57 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10004988 [exp] 88 / 6e-21 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116000 [exp] 451 / 2e-161 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G116500 [exp] 451 / 2e-161 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 362 / 4e-126 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G245300 [exp] 189 / 1e-58 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 188 / 2e-58 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10032193 pacid=23168464 polypeptide=Lus10032193 locus=Lus10032193.g ID=Lus10032193.BGIv1.0 annot-version=v1.0 ATGCTGCCTTACAGCTCAATCGAGGACGCGGCGGCCCACCTAGGACGAAACCTGACGTACGCCGAGACCATTTGGTTCGATTACTCCGCTAACAAGTCCG ACTACTTCCTCTTCTGCCACAACATTCTGTTCCTCTTCGTCATCTTCTCGTTAGTCCCGCTCCCGATCGTCTTCATCCAGCTCCTCCGATCGGCTACGTT CGAGCGGTACAAGATCCAGCCCAAGGTTCAGCTCTCCAACTCCGAGATCTTCAATTGCTACAAGGATGTCATGCTCACTTTCTTCTTCGTCGTCGGCCCT CTCCAGCTCGTCTCTTACCCTTCTATCCAGATGATTGGGATACGAACAGGGCTGCCATTGCCTTCAGGATGGGAAATTCTTGCGCAGTTGTTGGTTTACT TTGTGGTGGAGGACTATACAAACTACTGGGTACATAGATTTCTCCATGGGAAATGGGGGTATGAGAAGATTCACAAGGTTCATCACGAGTACACGGCTCC AATTGCTTTTGCTGCTCCGTATGCACACTGGGCTGAGATTTTGATCCTTGGGATCCCTTCTTTTCTGGGTCCAGCTATGGTTCCAGGCCACATGATCACT TTCTGGATGTGGATCGCTTTAAGGCAGATGGAGGCCATTGAAACACACAGTGGATATGACTTCCCATGGAGTTTCACTAAGTACATCCCATTCTACGGTG GTGCTGATTACCATGACTACCATCACTACGTCGGAGGCCAGAGCCAGAGCAACTTTGCATCAGTGTTCACCTACTGTGATTACATTTACGGAACCGACAA GGGCTATCGATATCAGAAGAAGGTCCTTCAAAAGGTAAAACCAAAACACAAACAATCTCTAACACTTTCACTACATCTGCATATTGCTCTGAAAACTTTC TTACCGTAG
AA sequence Show only first row Show all	>Lus10032193 pacid=23168464 polypeptide=Lus10032193 locus=Lus10032193.g ID=Lus10032193.BGIv1.0 annot-version=v1.0 MLPYSSIEDAAAHLGRNLTYAETIWFDYSANKSDYFLFCHNILFLFVIFSLVPLPIVFIQLLRSATFERYKIQPKVQLSNSEIFNCYKDVMLTFFFVVGP LQLVSYPSIQMIGIRTGLPLPSGWEILAQLLVYFVVEDYTNYWVHRFLHGKWGYEKIHKVHHEYTAPIAFAAPYAHWAEILILGIPSFLGPAMVPGHMIT FWMWIALRQMEAIETHSGYDFPWSFTKYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKVLQKVKPKHKQSLTLSLHLHIALKTF LP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	0	1
AT3G22440			FRIGIDA-like protein (.1)		Lus10006113 [exp]	3.5	0.8084
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	5.3	0.8424
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026610 [exp]	5.5	0.8014
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	7.2	0.8459
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	8.4	0.8058
AT5G52882			P-loop containing nucleoside t...		Lus10027551 [exp]	8.8	0.7779
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Lus10009967 [exp]	9.3	0.7123
AT3G13980			unknown protein		Lus10008457 [exp]	10.1	0.7714
AT1G68350			unknown protein		Lus10041431 [exp]	10.4	0.7529
AT1G68350			unknown protein		Lus10013533 [exp]	10.7	0.7521

Compare expression of checked genes

Lus10032193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.