Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62870 728 / 0 unknown protein AT1G12380 621 / 0 unknown protein AT1G79740 47 / 5e-05 hAT transposon superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024556 [exp] 1219 / 0 AT1G12380 797 / 0.0 unknown protein Lus10004325 [exp] 651 / 0 AT1G62870 977 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G130800 [exp] 689 / 0 AT1G12380 899 / 0.0 unknown protein Potri.001G116600 [exp] 642 / 0 AT1G62870 1017 / 0.0 unknown protein Potri.003G115900 [exp] 631 / 0 AT1G62870 1028 / 0.0 unknown protein Potri.012G129100 [exp] 585 / 0 AT1G12380 890 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032194 pacid=23168618 polypeptide=Lus10032194 locus=Lus10032194.g ID=Lus10032194.BGIv1.0 annot-version=v1.0 ATGGCATCGGCAGACAATAACGTGGCGGCGGATGCGGAGACGGAGGAGCCAACGGCGAAGGCGGCGCACAAGCGATACGAATGTCTTGTAACGGTGAGGA ACAAGGCGATCAAGGGGAAAGGAGCCTGGTACTGGGCCCACCTGGAGCCGATCTTGGTTCATAACTCCGACACCGGACTCCCCAAATCCGTCAAGCTCCG CTGCTCGTTATGCGCCGCCGTTTTCTCTGCCTCGAACCCTTCCCGCACGGCGTCGGAGCATCTCAAGCGCCGGACTTGCCCCAATTTCGCGGCTTCTTCC CCTTCCGTTCCCCCGCCGCCGCTCGCCGTCGCCGGGATGAAGCGTCCGGCAGCCTCTTCCGCCATCGCCCACCACCACCACCACCAAAGCTACGACCTCT CCGTCGCCACTGTCTCCGTATCTTCCCCTTCTTCGTTTCAACACAGTCCCACTCCGATCACAGTCGTAGAGCCGCCAAGCCGCTGTCAGGTGCTCTCCGG CGGGAAGGAGGATCTGGTTCCGCTGGCAATGTTGGAAGACAGCGTGAAAAGACTGAAAAGCCCCTCGACGCTCCGTTCAAATCCTCTGACGACGGCGCTC AGCCGGGAGCAAATCGACTCTGCAATGGACCACTTGTCCGATTGGGTCCACGAATCTTGCGGCAGCGTCTCTCTCTCCAGCCTCGACCACCCAAAATTCC GAAGCTTCCTCAACCAAGTCGGCCTCCCTCCGATCTCCATCCGAACTCTTGCTGCCGGAAGACTCGACGCGAAGTTCGAGCAAGCGAAAGCAGAGTCCGA AGCCAGGACCAGCGAAGCCATGTTCTTCCAGATTGCATCCGACGGCTGGAAATCAAACCAACCGATTTGCTGCTCTGGAGGAGAGTCCGAACCCAATTTG GTTAATTTGACAGTCAATTTACCCAACGGCACGAGTCTTTACCGGCGAGCGGTTTTCGTCAGCAGTTCAGAGAGATCGGCGTCGTTTTACGCAGAGGATA TTCTTCTGGAGACTGCGAAAGGAATCTGCGGCGGAGACGGAGAAAATATTCGGAAGTGCGCAGGGATTGTCTCCGACCGGTTTAAATCGAAGGCGCTGAG GAATCTGGAGGATAAGTATCCATGGATGGTGAATCTCTGCTGTCAGATTCAAGGTTTTAGAAGCTTGGCGAAAGATTTCGCCAGAGAGATTCCTCTGTTC GAATCTGTGGCAGAGAATTGTCTAAAGCTGGGAGCTTTCGTCAAGAGCAGCCCACAGATTAGGGAAAAGCTGTACAGGTACCAGTTTCAGGAATACGGGT GCTCGAATCCGATCCGAGTTTCGAAATTCCTCGATTGGAATTCCGAGACCGCCTTCTCGATGATCGATGACGTTATACACTCCGCCAAGGCGCTGCAGAT GGTCCTAACCGACGAATCATGCAAGCTGCGAGACGCGTTCTGGAGTGAACTGGAGGCGGTCCATTCCCTGGCGAAATTGGTTAAGGAAATCGGTCAGGAG ATCGAATCGGAAAGGCCATTAGTTGGACAATGCCTGTCGATTTGGGAAGAGTTGGGAGCGAAAGTGAGGGAATGGAGCGGGAAGCACTACGGAATACTCG GAGGAGGGCTTGAGTCGGTTTCGAAAGTGATCGAGAGACGGTTCGCGAAGAGCTACCATCCGGCGATGGCGGCAGCCTACATACTCGATCCGGTTTACTT GGTTAAGGACTCGAGCGGGAGGAAGTACCTCCCGCCGTTCAAGGACCTGATGCCAGAGCAAGAGAAGGACGTGGGGAGGCTAGTGACGAGGCTGGTTTCA AGGGAGGAGGCACACATTGCGCTGATGGAGCTGATGAAGTGGCGGACCGAGGGGCTCGATCCGGCTTATGCGAGAGCGGTCCAGATGAAGGAGAGGGATC CGGTTAGTGGCAAGATGAAACTGTCCAATCCGCAGAGTAGTAGGATTGTGTGGGAGACTTGCTTGAGTGATCAGTTCAGGACTTTGGGGAAAGTTGCTGT CAGGGTTATCTTTCTTCATGCAACTGCTTGTAGTGGGTTCAAGTGGGATGGTCTTAATAGGCCTAATTTGTTGGGATGGGTTGGTGGTGGATCAGGGAGA CGGAATTCGGTCGAGATTGAAAAGGCTCAGAAAATGATCTTCGTCGCTGCTCATTCGAAGCTTGGAAGGTGCGAAAGAAAAAGTTTTTTGAGCGAGGGAG ACGACGGGGAAGCTAACGGAGATGATGATGATGATGTTGGTGATGAAACTACTTCCTCCATGTAA
AA sequence Show only first row Show all	>Lus10032194 pacid=23168618 polypeptide=Lus10032194 locus=Lus10032194.g ID=Lus10032194.BGIv1.0 annot-version=v1.0 MASADNNVAADAETEEPTAKAAHKRYECLVTVRNKAIKGKGAWYWAHLEPILVHNSDTGLPKSVKLRCSLCAAVFSASNPSRTASEHLKRRTCPNFAASS PSVPPPPLAVAGMKRPAASSAIAHHHHHQSYDLSVATVSVSSPSSFQHSPTPITVVEPPSRCQVLSGGKEDLVPLAMLEDSVKRLKSPSTLRSNPLTTAL SREQIDSAMDHLSDWVHESCGSVSLSSLDHPKFRSFLNQVGLPPISIRTLAAGRLDAKFEQAKAESEARTSEAMFFQIASDGWKSNQPICCSGGESEPNL VNLTVNLPNGTSLYRRAVFVSSSERSASFYAEDILLETAKGICGGDGENIRKCAGIVSDRFKSKALRNLEDKYPWMVNLCCQIQGFRSLAKDFAREIPLF ESVAENCLKLGAFVKSSPQIREKLYRYQFQEYGCSNPIRVSKFLDWNSETAFSMIDDVIHSAKALQMVLTDESCKLRDAFWSELEAVHSLAKLVKEIGQE IESERPLVGQCLSIWEELGAKVREWSGKHYGILGGGLESVSKVIERRFAKSYHPAMAAAYILDPVYLVKDSSGRKYLPPFKDLMPEQEKDVGRLVTRLVS REEAHIALMELMKWRTEGLDPAYARAVQMKERDPVSGKMKLSNPQSSRIVWETCLSDQFRTLGKVAVRVIFLHATACSGFKWDGLNRPNLLGWVGGGSGR RNSVEIEKAQKMIFVAAHSKLGRCERKSFLSEGDDGEANGDDDDDVGDETTSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12380			unknown protein		Lus10032194 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	1.4	0.8259
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	3.9	0.8040
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	6.7	0.8200
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	6.9	0.8012
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	7.5	0.8221
AT5G65490			unknown protein		Lus10012731 [exp]	16.2	0.7632
AT1G52140			unknown protein		Lus10025828 [exp]	19.2	0.8183
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	19.4	0.7939
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	20.1	0.7959
AT1G64700			unknown protein		Lus10001663 [exp]	21.0	0.7886

Compare expression of checked genes

Lus10032194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.