Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12370 755 / 0 UVR2, PHR1 UV RESISTANCE 2, photolyase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024557 [exp] 946 / 0 AT1G12370 777 / 0.0 UV RESISTANCE 2, photolyase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116800 [exp] 800 / 0 AT1G12370 789 / 0.0 UV RESISTANCE 2, photolyase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10032195 pacid=23168611 polypeptide=Lus10032195 locus=Lus10032195.g ID=Lus10032195.BGIv1.0 annot-version=v1.0 ATGGGCTCCCTATCTCCTCCACCGGGAAATTCCGTCTCCGTCAATCCGGGTCGGATCCGGGTGCGGAAAGAAGCGTCGCCGCCGACGGGAACGGGTCCCG TAGTGTACTGGATGTTCAGGGATCAACGGTTGAAGGACAACTGGGCGCTGATCCACGCCGTTGATCAGGCCAATAAACGTAACGTCCCCGTAGCAGTTGC GTTCAACCTTTTTGACGAGTTTCTCGGGGCAAAAGCTCGGCAATTGGGGTTTATGCTTAGGGGCTTGAAGCAGCTTCAAAAAGATGTCCAGGAGAAGCTT CAGATTCCCTTCTTCTTGTTCCGTGGAGAAGCTGAAGAAACTGTGCCTAAGTTTTTGAAAGAGCGTGGGGCGTCGCTTTTGGTCACCGATTTCTCGCCCT TAAGGGAGATTCGGAAGTGTAACGAAGAGATCTTGAAAAGAGTGAACGGTCCGGTGAGTGTTCATGAAGTTGATGCTCATAATGTAGTGCCAATGTGGGT GGCTTCTGAGAAGTTGGAGTACAGTGCTAGGACTATAAGGAGCAAGATTACGAAAAAGTTACCGGAGTATCTCCTCGATTTCCCAGAGTTGAATCCACCA AGAGTTAAGTGGGTTGGCACCGTAGATGATCATTATCACACTGTTGATTGGGAAAGTATAATCCTTGAGGTTTTGAGGAAAGGAGCAGAAGTTCCGGAAC TCGAATGGTGCAAACCGGGAGAAGAAGCTGCAACGGAGGTACTGATGGGGTCCACAGATGGTTTCTTGACTAAAAGGGTGAAGAATTATGCTACAGATAG GAATATCCCGTTGAAGCCGAAAGGGCTCTCTGGTTTATCGCCATATCTTCATTTCGGTCAGATTTCTGCTCAGAGGTGTGCCCTCGAGGCACGTAAAGTT AGGCTGCTGTGTCCTCAGTCAGTCGATGCGTTTTTAGAGGAGCTGATCGTGCGGAGAGAGCTTGCTGATAACTTCTGCTACTACCAGCCACGCTACGATA CGATCGCAGGAGCGTGGGAATGGGCTCGGAGGACATTGCAGGATCATGCTGCTGACAAGAGAGAGCATGTTTACTCGATGGAGCAGCTGGAGATGGCAAA AACCATGGATCCTCTTTGGAATGCCTCTCAGATGGAGATGGTCATCCACGGGAAAATGCACGGATTCATGAGAATGTACTGGGCTAAAAAGATACTGGAA TGGACAAAAGGACCAGAAGAAGCTCTAGCAATCGCCATACATCTAAATGACAAGTACGAGATAGACGGCAGGGATCCAAGTGGATACGTTGGTTGTATGT GGTCGATATGTGGCGTCCATGATCAGGGATGGAAGGAGAGGCCGGTATTTGGCAAGATACGGTACATGAACTACGCAGGCTGCAAAAGGAAATTCGATGT CGACGGTTACATTTCCTACGTGAAGAGGCTTGCTGTCGATGTGAAGAAGAGGAAAGCCGAGTCTCAACTCGACCGAAACGGCAAGGAATTGTGTCATTAG
AA sequence Show only first row Show all	>Lus10032195 pacid=23168611 polypeptide=Lus10032195 locus=Lus10032195.g ID=Lus10032195.BGIv1.0 annot-version=v1.0 MGSLSPPPGNSVSVNPGRIRVRKEASPPTGTGPVVYWMFRDQRLKDNWALIHAVDQANKRNVPVAVAFNLFDEFLGAKARQLGFMLRGLKQLQKDVQEKL QIPFFLFRGEAEETVPKFLKERGASLLVTDFSPLREIRKCNEEILKRVNGPVSVHEVDAHNVVPMWVASEKLEYSARTIRSKITKKLPEYLLDFPELNPP RVKWVGTVDDHYHTVDWESIILEVLRKGAEVPELEWCKPGEEAATEVLMGSTDGFLTKRVKNYATDRNIPLKPKGLSGLSPYLHFGQISAQRCALEARKV RLLCPQSVDAFLEELIVRRELADNFCYYQPRYDTIAGAWEWARRTLQDHAADKREHVYSMEQLEMAKTMDPLWNASQMEMVIHGKMHGFMRMYWAKKILE WTKGPEEALAIAIHLNDKYEIDGRDPSGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFDVDGYISYVKRLAVDVKKRKAESQLDRNGKELCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10032195 [exp]	0	1
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	2.8	0.8348
AT1G12370		UVR2, PHR1	UV RESISTANCE 2, photolyase 1 ...		Lus10024557 [exp]	4.7	0.7802
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Lus10030705 [exp]	4.7	0.8299
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	10.2	0.8213
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10003418 [exp]	13.0	0.7772
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	14.0	0.7573
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10036288 [exp]	15.6	0.7940
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10028034 [exp]	16.7	0.7880
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	22.6	0.7710
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10007870 [exp]	22.6	0.7905

Compare expression of checked genes

Lus10032195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.