Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12360 994 / 0 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT1G02010 852 / 0 SEC1A secretory 1A (.1.2) AT4G12120 850 / 0 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 91 / 5e-19 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT2G17980 82 / 4e-16 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024558 [exp] 1308 / 0 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10015870 [exp] 786 / 0 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 750 / 0 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10018921 [exp] 95 / 6e-20 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 91 / 6e-19 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10023936 [exp] 83 / 4e-16 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 80 / 2e-15 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115800 [exp] 1087 / 0 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 1072 / 0 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.014G069300 [exp] 885 / 0 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.002G071600 [exp] 103 / 5e-23 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.005G188000 [exp] 100 / 4e-22 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.004G204400 [exp] 84 / 9e-17 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 82 / 5e-16 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10032196 pacid=23168673 polypeptide=Lus10032196 locus=Lus10032196.g ID=Lus10032196.BGIv1.0 annot-version=v1.0 ATGTCGTTCTCTGATTCCGATTCCTCGTCTTATGGTGCCGACTACAAAAATTTCAAGCAAATCACTCGCGAGCGTTTATTACAAGAAATGCTTCGATCGG CCAAAGCAGGGGATTCAAAATCAACCTGGAAGGTACTCATCATGGATAAACTTACTGTCAAGATAATGTCTTGTTCATGCAAGATGGCTGACATCACCCA GGAAGGAGTTTCATTGGTGGAGGACATATACAAAAGAAGACAGCCATTGCCCTCCATGGATGCCATATACTTCATCCAACCAACTAAAGAGAACATTTTA ATGTTCCAATCAGACATGGGCGGGAAAAAACCCTTATACAAGAAGGCATTTGTTTTCTTTAGTTCACCACTCTCGAAAGATTTGGTTAATCTTGTAAGAG ATAAGACTGCAGTATCTCCATCTCGGATGGGTGCTCTGAGAGAGATGAATTTGGAGTATTTTGCCATGGACAGCCAGGCTTTCCTTACTGATCACGAGAG GGCTTTAGAAGAGCTTTTTGGAGACGATGAAGATTCTCGAAGAGGTGACGCAGCCTTGAACGTGATTGCTACCCGCATGGCGACAGTTTTTGCTTCGATG AGGGAATTTCCCTATGTGCGTTATCGTGCTGCTAAGTCACTTGATGTGACAACAATGACAACTACACGTGATTTGATAACCACAAAACTTGCTGCTAGAA TTTGGGACCGGATTTCATCTTACAAACAAAAGATTAGTCAATTCCCTCAGACTGAAACTTGTGACTTGCTCATCCTTGATAGATCTGTGGATCAGATTGC TCCCGTCATTCATGAGTGGACGTACGATGCAATATGTCATGACTTATTGGATATGCAGGGTAACAAATATGTCCATGAGGCAAGTCATGCCAGCATCTCA GTTCCTGGCAAATCAGGTGGCCCGCCTGAGAAAAAAGAGGTCCTTTTGGAGGAACATGATCCTATATGGGTTGAGCTTCGTCATGCACATATTGCAGATG CTAGTGAGCGGTTGCACGAGAAGATGACAACTTTTGTATCAAAAAACAAAGCTGCGCAGATCCAACATGGTTCAAGAGACGGTGAACTTTCAACACGAGA TTTACAAAAGATGGTTCAGGCGTTACCACAATACAGTGAACAAATTGACAAGCTCTCCCTTCATGTAGAGATTGCAGGAAAGGTTAATCGAGTTATCAGG GACTCTGGGCTTCGAGACCTAGGACAGTTGGAGCAGGATCTTGTATTTGGGGATGCAGGAACAAAGGATGTAATCAAATATTTGACAACAAAAGAGGATG CTAGCCGTGAAAATAAGTTGGTGCGTTTATTGATGATTCTTGCGGCTATTTACCCCGAGAAGTTTGAGGGCGACAAGGGGCTGAATCTAATGAAGTTGGC CAAGTTACCTGAAGAGGATATGAATGCTGTCAATAACATGAGAATGCTTGGTGGGGCAACGGAGACTAAGAAAAGCTCCGCAAGTTTCAGTCTGAAGTTC GATATAAAGAAGAAGCGAGCTGCTAGGAAAGATCGTACTGATCAGGAAGAAACTGGATGGCAGCTTTCTCGATTCTATCCGATGGTAGAGGAACTTGTCG AAAAACTAAGCAAAGGTGAACTGTCCAAGGATGAATACCCGTGCTTGAACGATCCTAGTCCCACTTTCCACGGTACATCTCCAGCTGCGATAATGAATAC CAGTTCAGCTCCTCATTCCATGCGATCAAGACGAACAACGCCGACTTGGGCTAAACCTCGTCACTCCGATGATGGTTATTCAAGTGATTCTGTACTAAGA CACGCATCTAGTGACTTCAAGAAGATGGGTCGACGCATCTTCGTGTTTATCATCGGTGGAGCTACTAGATCTGAGCTACGCGCTTGTCACAAGCTTACAA GTAAGCTACAAAGAGAAGTCGTCCTAGGCTCCACAAGTCTAGACGATCCTCCCCAATTCATCACGAAACTGAAACTTCTGACAGCCAGCGAGCTTTCACT GGACGATCTGGAGATATGA
AA sequence Show only first row Show all	>Lus10032196 pacid=23168673 polypeptide=Lus10032196 locus=Lus10032196.g ID=Lus10032196.BGIv1.0 annot-version=v1.0 MSFSDSDSSSYGADYKNFKQITRERLLQEMLRSAKAGDSKSTWKVLIMDKLTVKIMSCSCKMADITQEGVSLVEDIYKRRQPLPSMDAIYFIQPTKENIL MFQSDMGGKKPLYKKAFVFFSSPLSKDLVNLVRDKTAVSPSRMGALREMNLEYFAMDSQAFLTDHERALEELFGDDEDSRRGDAALNVIATRMATVFASM REFPYVRYRAAKSLDVTTMTTTRDLITTKLAARIWDRISSYKQKISQFPQTETCDLLILDRSVDQIAPVIHEWTYDAICHDLLDMQGNKYVHEASHASIS VPGKSGGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTTFVSKNKAAQIQHGSRDGELSTRDLQKMVQALPQYSEQIDKLSLHVEIAGKVNRVIR DSGLRDLGQLEQDLVFGDAGTKDVIKYLTTKEDASRENKLVRLLMILAAIYPEKFEGDKGLNLMKLAKLPEEDMNAVNNMRMLGGATETKKSSASFSLKF DIKKKRAARKDRTDQEETGWQLSRFYPMVEELVEKLSKGELSKDEYPCLNDPSPTFHGTSPAAIMNTSSAPHSMRSRRTTPTWAKPRHSDDGYSSDSVLR HASSDFKKMGRRIFVFIIGGATRSELRACHKLTSKLQREVVLGSTSLDDPPQFITKLKLLTASELSLDDLEI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	0	1
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	1.0	0.9581
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	1.7	0.9348
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	2.0	0.9289
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	4.9	0.9354
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	5.9	0.9199
AT1G71090			Auxin efflux carrier family pr...		Lus10036001 [exp]	6.0	0.9121
AT2G30880			Pleckstrin homology (PH) domai...		Lus10029819 [exp]	6.2	0.8854
AT3G51130			unknown protein		Lus10025972 [exp]	6.3	0.9141
AT1G52320			unknown protein		Lus10025777 [exp]	6.3	0.8981
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	6.7	0.9024

Compare expression of checked genes

Lus10032196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.