Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12330 443 / 3e-152 unknown protein AT5G12900 234 / 2e-70 unknown protein AT3G60680 61 / 7e-10 Plant protein of unknown function (DUF641) (.1) AT2G45260 55 / 6e-08 Plant protein of unknown function (DUF641) (.1) AT1G29300 49 / 7e-06 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 49 / 8e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 47 / 2e-05 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT5G58960 47 / 3e-05 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024559 [exp] 784 / 0 AT1G12330 479 / 3e-166 unknown protein Lus10004335 [exp] 497 / 8e-174 AT1G12330 468 / 7e-162 unknown protein Lus10028918 [exp] 398 / 9e-137 AT1G12330 399 / 3e-137 unknown protein Lus10031820 [exp] 186 / 2e-52 AT5G12900 454 / 2e-154 unknown protein Lus10031249 [exp] 181 / 2e-50 AT5G12900 448 / 1e-151 unknown protein Lus10009284 [exp] 57 / 1e-08 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 56 / 5e-08 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 54 / 1e-07 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 52 / 9e-07 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115700 [exp] 534 / 0 AT1G12330 503 / 2e-175 unknown protein Potri.001G117000 [exp] 528 / 0 AT1G12330 465 / 1e-160 unknown protein Potri.003G210200 [exp] 239 / 2e-71 AT5G12900 603 / 0.0 unknown protein Potri.001G016600 [exp] 219 / 6e-65 AT5G12900 555 / 0.0 unknown protein Potri.002G145900 [exp] 59 / 3e-09 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 57 / 2e-08 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 55 / 6e-08 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 51 / 2e-06 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.013G155400 [exp] 50 / 3e-06 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 49 / 4e-06 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032197 pacid=23168556 polypeptide=Lus10032197 locus=Lus10032197.g ID=Lus10032197.BGIv1.0 annot-version=v1.0 ATGGCTCCCCCACATGCTTCATCGTCTTGTTCATCTTCTTCTTCCCCTTCTTCCCCCAACCCTCCTGCTCCTCCGCCGCTGCTCTCGTCCTACCACTTCT CCCACTTCACCCCCATTCAGGAATGCGAGAGGGAAGAGCAGGATGATGACTACAGCGAGCCCAGATCCACTCCCAAGCACCATCTGACGCCGGCCGCCGT CGGCCGGAGCAAGAGGCGGCAGAAGTCCGGCGATGACGGGTCAGTCTCCTGTAACAAGTGCCGCCCTCACTCCAGAGAGAAGATCTCAGTGGTTCCTTTG GATAACAACAACAACAACAAGCACTCGTTTATTCCTTCTTCGATTCCCAGCCCTAACGGGATCTTCAAGTCGATTTTCTCTTCCCTGACGAGGAAAAGCC CAAAATCAGCCGCCTATGCCGCCGGCGGAGGAGGAGAGGAGAAGTGGAAGATCGCGGCGGCGGAGATCTCGCACAAGCTGATTCAGGCGACGAGGAAGAA GGACGAGGCGGTACTCGAAGCTTCGAGGCTGAAATACTCCATGGCTGAGCTGGAGAAGAAGCTGAAAGGACTGGAGAACAGCTGTCACGTTTTGAAATAC GGCATCGACGAATGCAGCAGTAGCAGCAATAACAAGTTGAACAATTCGCCTCAATCGATCCTCGACGACGGCGATGGAGGCGGCGGAAACAAGCTCATCG TGGATCAGTTCCTAGTCGCGGTATCCGAATCGAGGTCCTCGGTCAAAATCCTGACCCGTTCTTTGACAGTACAGCTCAAACAATTGAACGCCTGCAAGGT GTTCGACAAAATGTCAGCCTTACTCCAGTCAAACGACGTGAAACACTCGCTGTCGAAAAACCCCAAGGGAGTGCTCCACTACCTGGAGGCGCTTCTCAAC AGGGCGTTCTTCGAGGATTTCGAGACGATCGGGTTCGCGAAGAGCTCGGCCGTCCGAGTCCTGAACCCGATCGACCGGTGCGAGTCGAACTACGCCTGTT TCGAGGTCCTGAAAGGGTTGACGTGGGAGGAAGTTCTGAGCAAAGGGACTCGCCATTTCAGCGAGGAGTTCAGCAGGTTCTGCGACAGGAAGATGAATGA CGTCGATTCAATGCTGGGCTGGAACCGAGCCTGGCCCGAACCGCTGCTCCAGGCCTTCTTCTTGGCTTCGAAAGCGGTTTGGCTGGTTCACTTGCTGGCC AACTCAGTTCATCCGGGTCTGCCTGTGTTTCGAGTCGAGAAAGGGATGGGGTTTGAGTCGGTTTACATGGAGGATATGGGTGGGGACCGAGCGAAGAAGC TGGTTCCTGGTTCGGTTCGGGTAATGGTTGCTCCAGGGTTCTATGTGTATGGGAATGTGGTGAAGTGTAAGGTTCTTTGTAGGTACGTTAATAACGGTAG TAGCATGAACGGTTCGGTTGATGATGAATGA
AA sequence Show only first row Show all	>Lus10032197 pacid=23168556 polypeptide=Lus10032197 locus=Lus10032197.g ID=Lus10032197.BGIv1.0 annot-version=v1.0 MAPPHASSSCSSSSSPSSPNPPAPPPLLSSYHFSHFTPIQECEREEQDDDYSEPRSTPKHHLTPAAVGRSKRRQKSGDDGSVSCNKCRPHSREKISVVPL DNNNNNKHSFIPSSIPSPNGIFKSIFSSLTRKSPKSAAYAAGGGGEEKWKIAAAEISHKLIQATRKKDEAVLEASRLKYSMAELEKKLKGLENSCHVLKY GIDECSSSSNNKLNNSPQSILDDGDGGGGNKLIVDQFLVAVSESRSSVKILTRSLTVQLKQLNACKVFDKMSALLQSNDVKHSLSKNPKGVLHYLEALLN RAFFEDFETIGFAKSSAVRVLNPIDRCESNYACFEVLKGLTWEEVLSKGTRHFSEEFSRFCDRKMNDVDSMLGWNRAWPEPLLQAFFLASKAVWLVHLLA NSVHPGLPVFRVEKGMGFESVYMEDMGGDRAKKLVPGSVRVMVAPGFYVYGNVVKCKVLCRYVNNGSSMNGSVDDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12330			unknown protein		Lus10032197 [exp]	0	1
AT1G12330			unknown protein		Lus10024559 [exp]	1.4	0.8985
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	2.4	0.8234
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	7.1	0.8547
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	8.7	0.8098
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	11.8	0.7680
					Lus10005392 [exp]	16.4	0.7733
AT5G05180			unknown protein		Lus10030507 [exp]	17.9	0.7868
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	19.6	0.7524
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	20.0	0.8054
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	22.8	0.7776

Compare expression of checked genes

Lus10032197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.