Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53020 197 / 2e-65 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1) AT2G36620 197 / 3e-65 RPL24A ribosomal protein L24 (.1) AT2G44860 72 / 2e-16 Ribosomal protein L24e family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024560 [exp] 219 / 7e-74 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1) Lus10006314 [exp] 209 / 3e-69 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1) Lus10029583 [exp] 209 / 6e-69 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1) Lus10008640 [exp] 206 / 8e-69 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1) Lus10035584 [exp] 206 / 1e-68 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1) Lus10014637 [exp] 100 / 5e-28 AT2G36620 100 / 6e-28 ribosomal protein L24 (.1) Lus10020552 [exp] 77 / 3e-18 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G085300 [exp] 204 / 2e-68 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.015G141900 [exp] 202 / 1e-67 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139400 [exp] 201 / 5e-67 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.012G139500 [exp] 201 / 5e-67 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.003G123101 [exp] 193 / 8e-64 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1) Potri.009G148500 [exp] 72 / 2e-16 AT2G44860 248 / 1e-85 Ribosomal protein L24e family protein (.1.2) Potri.004G187800 [exp] 72 / 3e-16 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01246 [flax] [poplar] Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence Show only first row Show all	>Lus10032198 pacid=23168700 polypeptide=Lus10032198 locus=Lus10032198.g ID=Lus10032198.BGIv1.0 annot-version=v1.0 ATGGTTTTGAAGACTGAGCTATGCCGTTTCAGCGGACAGAAGATTTACCCCGGCAGGGGAATCAGATTCATCCGATCTGATTCTCAGGTTTTCCTCTTTG CCAACTCGAAATGTAAGAGGTACTTCCACAACCGTCTGAAGCCTTCCAAGCTTACCTGGACCGCCGTGTTCAGGAAGCAGCACAAGAAGGACATTGCTGC TGAGGCTGTGAAAAAGAAGAGAAGAACCAACAAGAAGCCTTACTCGAGGTCCATCGTTGGTGCTTCCTTGGAGGTGATACAGAAGAGGAGGGCCGAAAAG CCTGAAGTCCGAGATGCTGCTCGTGAAGCTGCCATTCGTGAAATCAAGGAGAGGATTAAGAAGACCAAGGATGAGAAGAAGGCGAAGAAGGCTGAAGTCT CCAAGTCACAGAAGGGACAAGGTAAGGGTGGTATGCCTAGGGGTGCTGCACCAAAGGGCGGACCCAAGCTCGGCGGTGGCGGTGGAAAGCGATGA
AA sequence Show only first row Show all	>Lus10032198 pacid=23168700 polypeptide=Lus10032198 locus=Lus10032198.g ID=Lus10032198.BGIv1.0 annot-version=v1.0 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAVFRKQHKKDIAAEAVKKKRRTNKKPYSRSIVGASLEVIQKRRAEK PEVRDAAREAAIREIKERIKKTKDEKKAKKAEVSKSQKGQGKGGMPRGAAPKGGPKLGGGGGKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	0	1
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	2.0	0.8697
AT3G02080			Ribosomal protein S19e family ...		Lus10020836 [exp]	5.1	0.8561
AT1G55205			unknown protein		Lus10032319 [exp]	5.7	0.8147
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	6.5	0.8496
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	6.6	0.8487
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	7.5	0.8424
AT5G22610			F-box/RNI-like/FBD-like domain...		Lus10025560 [exp]	11.8	0.6922
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	12.0	0.7314
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10021315 [exp]	12.0	0.8451
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	12.2	0.8451

Compare expression of checked genes

Lus10032198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.