Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60800 373 / 3e-130 DHHC-type zinc finger family protein (.1) AT4G22750 318 / 1e-108 DHHC-type zinc finger family protein (.1.2) AT4G22753 306 / 2e-100 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G00840 263 / 3e-87 DHHC-type zinc finger family protein (.1) AT3G09320 119 / 2e-31 DHHC-type zinc finger family protein (.1) AT5G04270 108 / 2e-27 DHHC-type zinc finger family protein (.1) AT5G50020 87 / 5e-19 DHHC-type zinc finger family protein (.1.2) AT4G24630 82 / 2e-17 DHHC-type zinc finger family protein (.1) AT3G26935 82 / 2e-17 DHHC-type zinc finger family protein (.1) AT3G56930 79 / 3e-16 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024561 [exp] 548 / 0 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10002694 [exp] 283 / 3e-94 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 118 / 1e-32 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10009291 [exp] 119 / 2e-32 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 114 / 2e-29 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 112 / 1e-28 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 111 / 2e-28 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 93 / 1e-20 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 90 / 5e-20 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117100 [exp] 403 / 4e-142 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 400 / 8e-141 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 395 / 5e-139 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 365 / 3e-127 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 285 / 1e-95 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 117 / 9e-31 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 114 / 9e-30 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 109 / 5e-28 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 93 / 3e-21 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 92 / 9e-21 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10032199 pacid=23168693 polypeptide=Lus10032199 locus=Lus10032199.g ID=Lus10032199.BGIv1.0 annot-version=v1.0 ATGTGGCAGAAATCTGGTGGAGGAGGGGATGGAGGGTCAATAATGGCGCTGAATGTGTTCAAGTTCTGTACTTTCCTTAGGGCTCTTGGCTCCGTCATGA TCGTCTTCGTGATCGGCATCGTGGGGTTGACTTATTACGTCATCGTTGTGGATAATTATGGCCCAGCTCTGTTTCATGGCGGGATTGAGTCTTTTGTTGC TTTCCTCGTCTTGGCTTTCTTCCATGCTTTGTTGGTGATGCTTGTATGGAGTTACTTCTCCACCATTGTTACGGAACCTGGTGGTGTCCCGCTAAACTGG AGGCCAGCAACGGATGAGGAGAGCGGTGTTGCAGATCCTTTGGTCAGTACGGAAAACAATGCTGTCTTAGGTCTAAATCAGGATAGTGGGAAAGCACGAT TCTGCCGGAAATGCAACCAGTTTAAACCGCCTCGTTGCCATCACTGCTCAGTTTGCCGAAGATGCATATTGAAGATGGACCACCACTGCGTGTGGGTTGT TAATTGCGTTGGGGCAATGAACTACAAGTATTTCCTATTATTCTTGTTCTACACATTCCTTGAAACGACTCTTGTCACTATATCATTGCTCCGGCTGTTT GTAGCGTTTTTCGGAGATGGTGAAATAGATGGAGCGCCAGCAGATCTCGTCGCTACTTTCATTGCATTTGTGTTGAATTTGTCCTTTGCATTGAGTCTCC TTGGCTTCCTTGTTCTGCACATATCACTGGTGTTAGCAAATACCACAACCATTGAGGCATATGAAAAGAAAACTGATCCTAGATGGCGGTATGACCTCGG ACGGATGAGAAACTTCGAACAGGTATTCGGAACTGACAAGAGATACTGGCTAATACCGAGGTACTCGGCCGATGATTTGAAGCACATGCCGGCGCTGCAA GGGCTCGATTACCCAACAAGGTCTAACTTGGATGAGCTTCAGCAGCTCTGA
AA sequence Show only first row Show all	>Lus10032199 pacid=23168693 polypeptide=Lus10032199 locus=Lus10032199.g ID=Lus10032199.BGIv1.0 annot-version=v1.0 MWQKSGGGGDGGSIMALNVFKFCTFLRALGSVMIVFVIGIVGLTYYVIVVDNYGPALFHGGIESFVAFLVLAFFHALLVMLVWSYFSTIVTEPGGVPLNW RPATDEESGVADPLVSTENNAVLGLNQDSGKARFCRKCNQFKPPRCHHCSVCRRCILKMDHHCVWVVNCVGAMNYKYFLLFLFYTFLETTLVTISLLRLF VAFFGDGEIDGAPADLVATFIAFVLNLSFALSLLGFLVLHISLVLANTTTIEAYEKKTDPRWRYDLGRMRNFEQVFGTDKRYWLIPRYSADDLKHMPALQ GLDYPTRSNLDELQQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60800			DHHC-type zinc finger family p...		Lus10032199 [exp]	0	1
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	3.2	0.8655
AT5G18610			Protein kinase superfamily pro...		Lus10036499 [exp]	6.9	0.7659
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	9.5	0.8230
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	19.8	0.7394
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	33.2	0.7452
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	38.1	0.7803
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	38.7	0.7987
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	56.1	0.7597
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	62.3	0.7659
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	71.5	0.7357

Compare expression of checked genes

Lus10032199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.