Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02570 1232 / 0 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 978 / 0 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 939 / 0 Cullin family protein (.1) AT1G59790 412 / 1e-138 Cullin family protein (.1) AT1G26830 399 / 1e-128 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 395 / 3e-127 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 343 / 1e-106 CUL4, ATCUL4 cullin4 (.1) AT1G59800 267 / 3e-84 Cullin family protein (.1) AT2G04660 57 / 3e-08 APC2 anaphase-promoting complex/cyclosome 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024562 [exp] 1477 / 0 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 1403 / 0 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 1400 / 0 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10036739 [exp] 414 / 2e-134 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 405 / 5e-131 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 405 / 9e-131 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 398 / 3e-128 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 312 / 2e-96 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 206 / 1e-57 AT5G46210 913 / 0.0 cullin4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G217300 [exp] 1218 / 0 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 1209 / 0 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 1207 / 0 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 1198 / 0 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G148300 [exp] 405 / 8e-131 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 402 / 8e-130 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 355 / 4e-111 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 342 / 1e-105 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217700 [exp] 230 / 9e-70 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 214 / 6e-66 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [flax] [poplar] Cullin Cullin family CL0123 [flax] [poplar] HTH PF10557 [flax] [poplar] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Lus10032200 pacid=23168473 polypeptide=Lus10032200 locus=Lus10032200.g ID=Lus10032200.BGIv1.0 annot-version=v1.0 ATGGAGCGGAAGGTTATTGAGCTGGATCAGGGATGGGACTTCATGCGGAATGGAATCACGAAGCTGAAGGGTATACTGGAAGGGGGAGCTGATCAATTTA ACTCTGAAGAATATATGATGCTTTACACTACAATATACAATATGTGTACTCAGAAGCCTCCTCATGATTACTCGCAGCAGCTTTATGACAAGTATAAGGA AGCGTTTCAAGAGTACATTAGCTCCACTGTACTCCCGGCAATTAGGGAAAAGCATGACGAGTTTATGCTGAGAGAACTTGTGAAACGATGGACTAACCAT AAGCTCATGGTTCGGTGGCTTTCCCGGTTCTTCTATTATCTAGATCGATATTTTGTTGCCCGGAGATCACTTCCTGCACTTAAAGAAGTTGGACTTACGT GCTTCCGTGACCTGGTCTATAAGGAAGTAAATGTAAAAGCCAGGAATGCTGTGGTCGCTCTGATTGATCAAGAACGAGAGGGTGATCAAATTGACCGAGC TTTGTTGAAGAACGTGTTGGACATATTTGTTGAGATTGGGATGTCACAGATGGATTGTTATGAGCAGGATTTTGAGGCCCCTATGCTAGAAGATACCGGA GTATACTACAGCCAGAAGGCTTCGAATTGGATTCAGGATGATTCTTGTCCAGCTTATATGTTAAAGTCTGAGGAATGCCTGAAGAAGGAAAGAGAAAGGG TTGCAAATTATTTACACTCGAGCAGTGAGGGCAAACTCGTGGAGAGAGTGCAACATGAGTTGCTGGTGAACTTCTCCACTCAACTGCTCGAGAAGGAGAA TTCTGGGTGCCGTGCTCTGCTTAGAGACGATAAGGTGGAGGATCTGTGTCGCATGTATAGGCTCTATCATAAGATACCCAAGGGTCTAGATCCTGTTGCT ACCATATTCAAGCAGCACATTACCTCAGAAGGAACTGTATTGGTGCAGCAAGCTGAGGATGCTGCCACTACTCAGTCTGCAAGTGGTGGTCCGCAGGAAC AGGTGCTCATAAAGAAGGTGATTGAGATCCACGATAAGTACCTGGCTTATGTGGGCGATTGTTTCCAAAACCATACTCTGTTCCACAAGGCTATGAAAGA AGCATTTGAGATATTCTGCAATAAGACTGTTGGTGGAAGTCCGAGTGCTGAACTTCTGGCGACATTCTGTGATAATATCCTCAAAAAAGGAGGCAGTGAG AAACTCAGTGACGAAGCTATTGAAGAGATACTAGAGAAGGTTGTCAAGCTGCTCGCTTACATTAGCGATAAGGATCTTTTTGCTGAATTCTATAGGAAAA AGCTCGCTCGCCGCCTGCTCTTTGAGCGCAGTGCCAACGAGGAGCATGAAAAGAGCATCCTAACAAAGCTTAAGCAGCAATGTGGTGGACAATTCACCTC AAAGATGGAAGGAATGGTCACTGATTTGACCCTAGCGAAGGACAATCAATCAGAGTTTGAAAACTACCTTTCTAATAATCCAAATGCACATCCCGGGATT GACCTCTCTGTCAATGTTCTCACAACCGGATTCTGGCCAAGCTACAAGTCTTCCGATTTAAACCTTCCTTCCGAGATGGTTAGAGGCGTCCAAGTGTTCA AAGAATTCTATGATACTAAGAGCAAGCACAGGAAGCTCACTTGGATTTACTCTCTCGGGTCTTGCCAGCTTACTGGCAAGTTTGAAGCGAAGAATATCGA GATGGTTGTCTCTACTTATCAGGCTGCCATACTGTTATTGTTCAATACATCAGACAGGCTGAGCTACTCAGAGATCATGACTCAATCGAACTTAGGGCAT GAAGATATGGTTAGGTTATTGCACTCTCTTTCGTGTGCCAAGTATAAAATCCTAATCAAGACACCGAATACCAAGACCGTCGCGCAAACCGACATCTTTG AGTTCAACCCAAAGTTCACGGACAGAATGAGGAGGATCAAGATTCCTCTGCCAGTAGTGGACGAGAGGAAGAAGGTCGTTGAGGACGTAGACAAAGACAG GCGTTATGCGATTGACGCTGCAATTGTTAGGATCATGAAGAGCCGGAAAGTGCTTGGTCACCAGCAGTTGGTCATGGAGTGTGTCGAGCAGCTTAGTCGC ATGTTCAAGCCGGACATCAAAGCGATCAAGAAGCGGATGGAGGATTTGATAGCTCGGGAGTATCTAGAGAGGGACAAGAACAACGCCAACCTGTTTAGGT ATCTGGCTTAG
AA sequence Show only first row Show all	>Lus10032200 pacid=23168473 polypeptide=Lus10032200 locus=Lus10032200.g ID=Lus10032200.BGIv1.0 annot-version=v1.0 MERKVIELDQGWDFMRNGITKLKGILEGGADQFNSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKEAFQEYISSTVLPAIREKHDEFMLRELVKRWTNH KLMVRWLSRFFYYLDRYFVARRSLPALKEVGLTCFRDLVYKEVNVKARNAVVALIDQEREGDQIDRALLKNVLDIFVEIGMSQMDCYEQDFEAPMLEDTG VYYSQKASNWIQDDSCPAYMLKSEECLKKERERVANYLHSSSEGKLVERVQHELLVNFSTQLLEKENSGCRALLRDDKVEDLCRMYRLYHKIPKGLDPVA TIFKQHITSEGTVLVQQAEDAATTQSASGGPQEQVLIKKVIEIHDKYLAYVGDCFQNHTLFHKAMKEAFEIFCNKTVGGSPSAELLATFCDNILKKGGSE KLSDEAIEEILEKVVKLLAYISDKDLFAEFYRKKLARRLLFERSANEEHEKSILTKLKQQCGGQFTSKMEGMVTDLTLAKDNQSEFENYLSNNPNAHPGI DLSVNVLTTGFWPSYKSSDLNLPSEMVRGVQVFKEFYDTKSKHRKLTWIYSLGSCQLTGKFEAKNIEMVVSTYQAAILLLFNTSDRLSYSEIMTQSNLGH EDMVRLLHSLSCAKYKILIKTPNTKTVAQTDIFEFNPKFTDRMRRIKIPLPVVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVMECVEQLSR MFKPDIKAIKKRMEDLIAREYLERDKNNANLFRYLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	0	1
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	2.2	0.9128
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	2.6	0.9366
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	4.0	0.9129
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	4.2	0.9284
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	4.9	0.9014
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	5.3	0.9088
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	5.7	0.9072
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	5.7	0.9226
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	6.7	0.9000
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	6.9	0.8994

Compare expression of checked genes

Lus10032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.