Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22740 167 / 8e-49 glycine-rich protein (.1.2) AT2G45380 127 / 9e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024563 [exp] 413 / 2e-145 AT4G22740 221 / 9e-70 glycine-rich protein (.1.2) Lus10015873 [exp] 130 / 1e-35 AT2G45380 212 / 2e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117400 [exp] 223 / 4e-70 AT4G22740 209 / 3e-64 glycine-rich protein (.1.2) Potri.003G115400 [exp] 211 / 1e-65 AT4G22740 212 / 5e-66 glycine-rich protein (.1.2) Potri.014G069100 [exp] 143 / 4e-40 AT2G45380 198 / 1e-59 unknown protein Potri.002G147150 [exp] 51 / 1e-07 AT2G45380 68 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032201 pacid=23168698 polypeptide=Lus10032201 locus=Lus10032201.g ID=Lus10032201.BGIv1.0 annot-version=v1.0 ATGCAAGGAGGAAGAGGTGGAGGGAATCCTTTCTCTGCGTTTGGTGATCCATTTGGAGGTTTTGGAGGATTTGGTGGTTTTGGAGGCCAGATGAGTTTTC CGTTTGGCCTTCCGGACGGAAGAGATCCATTCGACGATCCTTTCTTTACTCGTCCATTCGGAGGAATGAGCCAATATTATCAAGCCACAGGAGCCAATAG ACCACGAGGGCCAGTAATCAAGGAACTAAACTCTGATGATGAGACACAGGATGCTCATGAGGAGAGGAAAGCGAACTCCAGGAAGCATGGGAGGTCCTTT AATGAGCCATACATCTATGAAGTAGATGATGAAGCTGAAGGGAGACAAAGCAGGCATAACAAGCTCAGCAAAATGCAGAATCAGCCCCATAGCCAGAGCT TTGTGGTTGAAAGTTCAACCGTCTCATATGGTGGTAGCAATGGCACCTACTACACTTCATCCAAGACAAGGAGAACAGGAAGTGATGGGGTGACATATGA AGAAAGCAAAGAAGCTGATACTTCTACAAAGAAAGCATCTCATAGGATTTCCAGGGGTATACACAATAAGGGCCATACACTAGACCGAAAGCTTAACCCA GACGGGAAGGTTGATACCCAGGAGATCCTGCACAATCTCGAGCAAGATGAACTTCTTCGTTTCGAGCAATCTTGGAAAAATAACGATACACAGACCCTGC CTCACTGGGCTCAGTGGGGTGGAAACTACAGTGGCATCGATAATACGAATAGTCGTATTTATATTACCATGCTTGATGTGATTTGTTGCTCATTTCTTAT ACCCTATGTGGTCGACCTGACCGACTCCTATTCCACAGGTCCATGTGGCAGTGCACAGAATCATCCTCAGGCTAGTCATGGAGGCCGGGCACTTCCATCG ACAGAACGCTCGAATCCAACTGACAGATCGGTGGTAGCATCTTCTGGTCGTCAGCACTCGGGAAAGTCGAAGCATTCAGGCAAGAATTCCGCGTCTGGTT CGCAAGGACGCTGA
AA sequence Show only first row Show all	>Lus10032201 pacid=23168698 polypeptide=Lus10032201 locus=Lus10032201.g ID=Lus10032201.BGIv1.0 annot-version=v1.0 MQGGRGGGNPFSAFGDPFGGFGGFGGFGGQMSFPFGLPDGRDPFDDPFFTRPFGGMSQYYQATGANRPRGPVIKELNSDDETQDAHEERKANSRKHGRSF NEPYIYEVDDEAEGRQSRHNKLSKMQNQPHSQSFVVESSTVSYGGSNGTYYTSSKTRRTGSDGVTYEESKEADTSTKKASHRISRGIHNKGHTLDRKLNP DGKVDTQEILHNLEQDELLRFEQSWKNNDTQTLPHWAQWGGNYSGIDNTNSRIYITMLDVICCSFLIPYVVDLTDSYSTGPCGSAQNHPQASHGGRALPS TERSNPTDRSVVASSGRQHSGKSKHSGKNSASGSQGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22740			glycine-rich protein (.1.2)		Lus10032201 [exp]	0	1
AT2G14260		PIP	proline iminopeptidase (.1.2)		Lus10035652 [exp]	12.7	0.7951
AT4G18230			unknown protein		Lus10032224 [exp]	28.3	0.7045
AT1G48580			unknown protein		Lus10009051 [exp]	52.8	0.6590
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Lus10020394 [exp]	180.2	0.6229
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10030140 [exp]	217.5	0.6326
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	249.0	0.6333

Compare expression of checked genes

Lus10032201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.