Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62850 230 / 3e-77 Class I peptide chain release factor (.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024564 [exp] 259 / 4e-88 AT1G62850 283 / 1e-96 Class I peptide chain release factor (.2.3) Lus10005944 [exp] 40 / 0.0007 AT3G62910 644 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1) Lus10029444 [exp] 39 / 0.001 AT3G62910 632 / 0.0 ALBINO AND PALE GREEN, Peptide chain release factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115300 [exp] 255 / 4e-87 AT1G62850 258 / 2e-87 Class I peptide chain release factor (.2.3) Potri.001G117500 [exp] 249 / 7e-85 AT1G62850 306 / 3e-106 Class I peptide chain release factor (.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [flax] [poplar] RF PF00472 [flax] [poplar] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Lus10032202 pacid=23168609 polypeptide=Lus10032202 locus=Lus10032202.g ID=Lus10032202.BGIv1.0 annot-version=v1.0 ATGATTTCTCGTTACGATTTTGCTTTTGGCGTTGTTCTGGATTCCATTGATGTATCAGAGTGGGGAAATGAGCTAAGTTCTTGTTTATTGGTTATCGCTT GCAATCTCCTGAGCAAACCTGCTTTAACAAATAATGTGACGGTGAGTTTCGCTAGGAGTGGTGGGCCTGGAGGTCAAAATGTGAACAAAGTGAATACGAA GGTGGATATGCGGTTCAATGTTAAGAATGCGCACTGGCTAAGTGAAAGGGTCAAGGAGAAGATAATGCAAATGGAAAAGAATCGAATCAACAAAGATGGT GAAATCGTCATCTCCTCAACAAAGACTAGAACACAGAAGGGTAACATTGAAGATGCTTTGTCGAAATTGCAGGCAATCATTGATGCTGCCTCTTACGTGC CACCCCCTCCTTCAGAAGAGCAAAAGAAGAAAATTGCAAAGCTAGCTGCAATAGGTGAGCATAAGCGACTGAAAAGCAAGAAGGTTCTTTCGGATAAGAA AGCATTCAGAAGAAGCCGAGACAACTGGGACTGA
AA sequence Show only first row Show all	>Lus10032202 pacid=23168609 polypeptide=Lus10032202 locus=Lus10032202.g ID=Lus10032202.BGIv1.0 annot-version=v1.0 MISRYDFAFGVVLDSIDVSEWGNELSSCLLVIACNLLSKPALTNNVTVSFARSGGPGGQNVNKVNTKVDMRFNVKNAHWLSERVKEKIMQMEKNRINKDG EIVISSTKTRTQKGNIEDALSKLQAIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVLSDKKAFRRSRDNWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62850			Class I peptide chain release ...		Lus10032202 [exp]	0	1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010331 [exp]	30.9	0.7274
					Lus10017606 [exp]	68.5	0.7046
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10021910 [exp]	131.2	0.6700
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10022163 [exp]	157.6	0.6678
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10040227 [exp]	162.9	0.6560
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	250.3	0.6423
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10032889 [exp]	291.4	0.6185

Compare expression of checked genes

Lus10032202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.