Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45360 112 / 2e-31 Protein of unknown function (DUF1442) (.1) AT3G60780 105 / 7e-29 Protein of unknown function (DUF1442) (.1) AT1G62840 96 / 6e-25 Protein of unknown function (DUF1442) (.1) AT1G12320 76 / 2e-17 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024565 [exp] 229 / 5e-77 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117600 [exp] 160 / 2e-50 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 156 / 7e-49 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 127 / 1e-37 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 116 / 3e-33 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 42 / 4e-05 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 40 / 0.0002 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07279 [flax] [poplar] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Lus10032203 pacid=23168507 polypeptide=Lus10032203 locus=Lus10032203.g ID=Lus10032203.BGIv1.0 annot-version=v1.0 ATGCAGCAGGCGGCGGCTGGAGGAGGAGGAGGTGGAGGAGTTGATGTTGTTCTGCCAGCGGGGGATCAGGTGGTAGTTGGGGAGCCGGAGGAGGTGATGG AAAGGTTGGTCGGGGTAGATTTCTTGGTGGTGGATTCTAAGAGGAAGGATTTCGGTAGGGTGCTGAGAGCTGCGAAGCTCAGTAGCAGAGGAGCTGTGTT GGTGTGTAAGAACGCTAGCTCGAAGCAGGCGGCGAGCTTCCGGTGGAGAAGCGTCCTGGACGGCGGCTCCACGCGGCGGCTGGTGAGATCGGTGTATCTT CCGGTGGGGAAAGGGCTTGATATTGCTCATGTTGCCACGAGTGGTGCTGCTGGGAACTCCGGCCAGGGGAAAGGTGGAGGAGGAAAAAGCAGATGGATCA AACATGTTGATCGAGAATCAGGGGAGATCCATGTAATCAGAAAGTAA
AA sequence Show only first row Show all	>Lus10032203 pacid=23168507 polypeptide=Lus10032203 locus=Lus10032203.g ID=Lus10032203.BGIv1.0 annot-version=v1.0 MQQAAAGGGGGGGVDVVLPAGDQVVVGEPEEVMERLVGVDFLVVDSKRKDFGRVLRAAKLSSRGAVLVCKNASSKQAASFRWRSVLDGGSTRRLVRSVYL PVGKGLDIAHVATSGAAGNSGQGKGGGGKSRWIKHVDRESGEIHVIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45360			Protein of unknown function (D...		Lus10032203 [exp]	0	1
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	1.0	0.9336
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	11.0	0.8952
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	15.2	0.8730
AT3G17940			Galactose mutarotase-like supe...		Lus10005808 [exp]	28.2	0.9047
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10031500 [exp]	30.8	0.8861
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10009989 [exp]	34.3	0.8745
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	39.4	0.8824
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10030391 [exp]	39.4	0.8892
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	51.5	0.8644
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	52.6	0.8616

Compare expression of checked genes

Lus10032203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.