Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12130 485 / 1e-171 Glycine cleavage T-protein family (.1) AT1G60990 45 / 4e-05 Glycine cleavage T-protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024566 [exp] 744 / 0 AT4G12130 521 / 0.0 Glycine cleavage T-protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G117700 [exp] 520 / 0 AT4G12130 451 / 2e-158 Glycine cleavage T-protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0289 [flax] [poplar] FBD PF01571 [flax] [poplar] GCV_T Aminomethyltransferase folate-binding domain CL0289 [flax] [poplar] PF08669 [flax] [poplar] GCV_T_C Glycine cleavage T-protein C-terminal barrel domain
Representative CDS sequence Show only first row Show all	>Lus10032204 pacid=23168523 polypeptide=Lus10032204 locus=Lus10032204.g ID=Lus10032204.BGIv1.0 annot-version=v1.0 ATGCGCCAATTCAATTCCTTGAAACCCTTCCTCGCCGCCGGGAGGCTCCGCCACAACCACTCCGAAGCCATTGACGCCGCCGGTCCCGTCGCTTCCCTCC TCAAATCCCGATCAGTAATCCGTTTCGCCGGGCCCGACACCATCAAGTTCCTCCAAGGCCTAGTCACTAACGATGTCCGACGATTCGGCGAATCCTCGCC CCACGAGCGTTCTTCAACGATCCCGACTCCGAATATGCCTGTCGCCTCCGAGCCGCCAATGTACGCCGCCTTGCTCACCCCCCAGGGTAGGTTCCTGTAC GATTTCTTCCTTTACAGACCTGCAAAGCAAGGAGATAAGCTCGACCCGACCGGTTCGGGTCCTGGGTCGGAACCCGGCAGCTCGCTTGAACTCTTCGCCG ATGTGGATGCTTCTGTGCTAGACGAGCTATTGCAAACTTTGAAAAAGTATAGGTTAAGGGCAAAGGTTGAGATTGAGAATGTAAGGGATGACTTTCGATG CTGGCAACGATTCGGGGGAGATATCGGCAAGAAATCCAGCAAAGTAGAAGAGCCAGAGGCAGCTAGTGTGGGATGGGGATCTGGTGTCGATCGTGCTGGT ATGTCAGCTTCGCATGGAACTGGAAATGGTGGTTGGCAATGGTTCAAAGATCCGAGACTGGAATGCCTCGGTTTGAGAGGGATCTTCCCAGCCGATACGA CTCCTCCCTTAGTCGAGGCTGATAAGGAAACGAATGAGGAGAACTACCTGTTATGGCGAGTCAAGCAGGGAGTTGCAGAAGGCTCATCCGAGATTCGGAA AGGTGAGGCCATTCCGCTCGAGTACAATCTCGTGGGATTGAACGCAATAAGCTTTGAAAAAGGTTGCTACGTCGGTCAAGAGCTTATTGCCAGGACGCAC CATCGAGGGGTGATTCGTAAACGCTTGGTTCCTTTGAAGTTCGTCGATGAAGTTGGAAAAGAGGTGGAACAGCAAGTAGCTCCGGGTTCACAAGTGATCG ATGCTGCTGCAGGCAAGAAGATTGGTTCCGTAACTACCGCAATCGGTCACCGAGGCCTTGGCGTTTTGAGAGTGGACGATGCCTTCGGAGAATCGTGCTC GCTGGCCGTAGAAGGGTTGGAAAATGTCAAGGTGGAAGCTTTGAAACCGAAATGGTGGCCTCGTGAATGGTTTCCGGAGCATCATCGACAGAGTGCAGTA GCATAG
AA sequence Show only first row Show all	>Lus10032204 pacid=23168523 polypeptide=Lus10032204 locus=Lus10032204.g ID=Lus10032204.BGIv1.0 annot-version=v1.0 MRQFNSLKPFLAAGRLRHNHSEAIDAAGPVASLLKSRSVIRFAGPDTIKFLQGLVTNDVRRFGESSPHERSSTIPTPNMPVASEPPMYAALLTPQGRFLY DFFLYRPAKQGDKLDPTGSGPGSEPGSSLELFADVDASVLDELLQTLKKYRLRAKVEIENVRDDFRCWQRFGGDIGKKSSKVEEPEAASVGWGSGVDRAG MSASHGTGNGGWQWFKDPRLECLGLRGIFPADTTPPLVEADKETNEENYLLWRVKQGVAEGSSEIRKGEAIPLEYNLVGLNAISFEKGCYVGQELIARTH HRGVIRKRLVPLKFVDEVGKEVEQQVAPGSQVIDAAAGKKIGSVTTAIGHRGLGVLRVDDAFGESCSLAVEGLENVKVEALKPKWWPREWFPEHHRQSAV A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12130			Glycine cleavage T-protein fam...		Lus10032204 [exp]	0	1
AT4G12130			Glycine cleavage T-protein fam...		Lus10024566 [exp]	1.0	0.8305
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10039019 [exp]	19.3	0.7648
AT4G00930		CIP4.1	COP1-interacting protein 4.1 (...		Lus10011397 [exp]	21.7	0.8285
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10008305 [exp]	23.2	0.8205
AT3G51010			unknown protein		Lus10042347 [exp]	28.7	0.8249
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	29.1	0.8024
AT3G51650			unknown protein		Lus10025250 [exp]	30.2	0.8015
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	31.0	0.8103
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	34.1	0.8175
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	34.3	0.7827

Compare expression of checked genes

Lus10032204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.