Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62810 194 / 3e-58 Copper amine oxidase family protein (.1) AT4G12280 179 / 2e-56 copper amine oxidase family protein (.1) AT3G43670 183 / 2e-54 Copper amine oxidase family protein (.1) AT4G12290 178 / 2e-52 Copper amine oxidase family protein (.1) AT1G31690 117 / 9e-31 Copper amine oxidase family protein (.1) AT1G31710 103 / 5e-26 Copper amine oxidase family protein (.1) AT4G14940 100 / 9e-25 ATAO1 amine oxidase 1 (.1) AT1G31670 92 / 8e-22 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024568 [exp] 261 / 1e-83 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 164 / 2e-47 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024571 [exp] 161 / 3e-46 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 114 / 2e-29 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10010542 [exp] 110 / 2e-28 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 104 / 1e-26 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10026757 [exp] 104 / 4e-26 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 103 / 7e-26 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 103 / 7e-26 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118200 [exp] 211 / 8e-65 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118300 [exp] 187 / 6e-56 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 112 / 8e-29 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.010G088800 [exp] 108 / 2e-27 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 108 / 2e-27 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 107 / 4e-27 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain
Representative CDS sequence Show only first row Show all	>Lus10032206 pacid=23168597 polypeptide=Lus10032206 locus=Lus10032206.g ID=Lus10032206.BGIv1.0 annot-version=v1.0 ATGGTGTTTGCTGGTTTGAATTTCCACAAGCGATTATTTGGTGAAGGTGTGTGGATGTTTGTCATTGTTGTAGAGAATTGGGATTCGGTGCTACCTTTCC ATCAAGTTTCAGACAACACGAACCAAGTCCCGGACCAGGAAGAAGAAGGTCCTCTGGTGTTGGAGAACGTGATCGGAGTGGTGCACGACCACTGTGTCAC GTTCCACCTAGACATGGACATGGATGGACCCAACAACACGTTCGTGAAGGTCAACTTGGTCAAGGAAGAGAACATACAGGGCAAAAATCCTAGGAAGAGC TGCCTGAGGCCGAAGAGACACGTGGCGAAAACGGAGGAGGATGCTCGGATCAGGCTGAGCCTTTATGATCCGTCAGAGTTCCATGTCGTAAACCCTTCGA GGAGGTCGAGACTCGGGAACCCTTCCGGGTACAAGGTCGTCCCCAGTGGGAATGCTGCTAGCTTGCTCGATCCTGATGATCCGCCTCAGTTGCGGAGTGC TTTCACTAATAATCAGGTCGGACCATCTGAACTTAATCTGAGTTATAATTGA
AA sequence Show only first row Show all	>Lus10032206 pacid=23168597 polypeptide=Lus10032206 locus=Lus10032206.g ID=Lus10032206.BGIv1.0 annot-version=v1.0 MVFAGLNFHKRLFGEGVWMFVIVVENWDSVLPFHQVSDNTNQVPDQEEEGPLVLENVIGVVHDHCVTFHLDMDMDGPNNTFVKVNLVKEENIQGKNPRKS CLRPKRHVAKTEEDARIRLSLYDPSEFHVVNPSRRSRLGNPSGYKVVPSGNAASLLDPDDPPQLRSAFTNNQVGPSELNLSYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62810			Copper amine oxidase family pr...		Lus10032206 [exp]	0	1
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Lus10017821 [exp]	7.3	0.7353
AT3G54826			Zim17-type zinc finger protein...		Lus10037983 [exp]	21.8	0.6580
AT5G57860			Ubiquitin-like superfamily pro...		Lus10036598 [exp]	23.4	0.7073
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10000044 [exp]	29.7	0.6921
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	34.9	0.7002
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	35.9	0.7033
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	38.8	0.6778
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10011640 [exp]	42.2	0.6544
AT3G11591			unknown protein		Lus10024722 [exp]	45.5	0.6399
AT2G44525			Protein of unknown function (D...		Lus10012187 [exp]	53.0	0.6234

Compare expression of checked genes

Lus10032206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.