Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12240 392 / 3e-136 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G52010 210 / 1e-64 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024570 [exp] 392 / 4e-138 AT4G12240 234 / 3e-76 zinc finger (C2H2 type) family protein (.1) Lus10024807 [exp] 214 / 1e-65 AT5G52010 456 / 6e-160 C2H2-like zinc finger protein (.1) Lus10018728 [exp] 180 / 5e-54 AT5G52010 375 / 5e-130 C2H2-like zinc finger protein (.1) Lus10018729 [exp] 64 / 6e-12 AT5G52010 136 / 2e-38 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114700 [exp] 444 / 5e-156 AT4G12240 424 / 5e-148 zinc finger (C2H2 type) family protein (.1) Potri.014G025100 [exp] 211 / 8e-65 AT5G52010 441 / 5e-154 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF01936 [flax] [poplar] NYN NYN domain
Representative CDS sequence Show only first row Show all	>Lus10032208 pacid=23168548 polypeptide=Lus10032208 locus=Lus10032208.g ID=Lus10032208.BGIv1.0 annot-version=v1.0 ATGAGATACATCTCCCAGCTCAAACCCCAGAACCAACTTCTCAACTTTTTTAGATTCCGCCGTGTCAGTACAGAGTCCCAACCCCCTTTACCTAGGGTAG CAATCTTCTGGGACTTAGACAACAAACCCCCAAACTCCACCCCGCCATTCGAGGCAGCTCTGAAGCTCAAAAGGGCAGCTTCCTCATTCGGGATCGTCAA ATACACAGTAGCTTACGCCAATCGCCATGCCTTCAGTCACGTGCCGTTACCTGTAAGGCAGCAAAGGAATGGTAGGGAACAGTTGAATCAATTGGAGAAC AAAGGTTTGATAAAACCTTTGGAGCCGTATCTCTGCAGAGTATGCGGGAGAAGGTTTTACAACAATGAGAAGATGATGAATCACTTTAGGCAGATTCACG AGCGTGAGAATCAGAAGAGAGTGAACCAGATTGAATCCGCTAGAGGGAAGAGGAGGGTCAACTTGGTTGGTAAGTTTGCTATGAAGATGCAGAAGTACAA GAACGCTTCCAGGGAGGTACTGACTCCGAAAGTCGGATATGGATTAGCTGATGAGCTGAGGAGGGCGGGGTTTTGGGTTGGGGAGGTTTCGAGCAAGCCG GAGGCAGCAGACGTCGCGTTGAAGGAGAGGATGGTGGACGTGATGGACAAGAGGAAAGCTGAGTACTTGGTGCTAGTGTCGGACGATTCAGGTTTCCTCG GAGTGCTCAAGGAGGCGAAATCGAGGTGTTTGAAGACTGTTGTGGTTGGAAACATGATGGAAGAAGGTGCAAAGTTGAAGAGGGTTGCTGATGCTGGATT CTCGTGGCAGGAGGTGCTGATGGGGAAGGCTAAGAAGGAAGGAGCTTCGGTCGTGGAGAAATGGAGCGATCGGGATGTTTTGGAGAGGCTGGAGTGGAGG TTTGATCCTGAGAAGGAGAAGTCTGCTTATGCTGCTGTTAATCAGTTCTACAGTTGTAATGCCGATGCTGATCATGAAGGGTTTGATGATGATGGCTACT TTGATGGGGATGGAGTTGATGTTGTGAAGAAGGAAGATTCTGGCTCTTGGTGGGAGCTGGATTCTGAATCACGATGA
AA sequence Show only first row Show all	>Lus10032208 pacid=23168548 polypeptide=Lus10032208 locus=Lus10032208.g ID=Lus10032208.BGIv1.0 annot-version=v1.0 MRYISQLKPQNQLLNFFRFRRVSTESQPPLPRVAIFWDLDNKPPNSTPPFEAALKLKRAASSFGIVKYTVAYANRHAFSHVPLPVRQQRNGREQLNQLEN KGLIKPLEPYLCRVCGRRFYNNEKMMNHFRQIHERENQKRVNQIESARGKRRVNLVGKFAMKMQKYKNASREVLTPKVGYGLADELRRAGFWVGEVSSKP EAADVALKERMVDVMDKRKAEYLVLVSDDSGFLGVLKEAKSRCLKTVVVGNMMEEGAKLKRVADAGFSWQEVLMGKAKKEGASVVEKWSDRDVLERLEWR FDPEKEKSAYAAVNQFYSCNADADHEGFDDDGYFDGDGVDVVKKEDSGSWWELDSESR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032208 [exp]	0	1
AT3G09030			BTB/POZ domain-containing prot...		Lus10038089 [exp]	10.9	0.6015
					Lus10004960 [exp]	20.5	0.7190
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	60.4	0.6269
AT5G42670			Agenet domain-containing prote...		Lus10011444 [exp]	62.1	0.6669
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10042452 [exp]	101.4	0.6070
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	102.2	0.6008
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	121.8	0.5922
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Lus10002850 [exp]	152.7	0.5723
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	157.5	0.5938
AT5G09760			Plant invertase/pectin methyle...		Lus10013721 [exp]	198.4	0.5714

Compare expression of checked genes

Lus10032208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.