Plant FIBer expression Database

Lus10032209 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12290 961 / 0 Copper amine oxidase family protein (.1)
AT1G62810 832 / 0 Copper amine oxidase family protein (.1)
AT3G43670 816 / 0 Copper amine oxidase family protein (.1)
AT1G31690 565 / 0 Copper amine oxidase family protein (.1)
AT1G31710 558 / 0 Copper amine oxidase family protein (.1)
AT1G31670 533 / 7e-180 Copper amine oxidase family protein (.1)
AT4G14940 510 / 6e-172 ATAO1 amine oxidase 1 (.1)
AT4G12280 473 / 6e-163 copper amine oxidase family protein (.1)
AT4G12270 455 / 3e-153 Copper amine oxidase family protein (.1)
AT2G42490 234 / 4e-66 Copper amine oxidase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024571
[exp]
1321 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1)
Lus10024568
[exp]
819 / 0 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1)
Lus10010542
[exp]
591 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1)
Lus10004912
[exp]
584 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1)
Lus10010540
[exp]
564 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1)
Lus10026757
[exp]
552 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1)
Lus10021922
[exp]
549 / 0 AT4G14940 839 / 0.0 amine oxidase 1 (.1)
Lus10013356
[exp]
419 / 7e-140 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1)
Lus10041208
[exp]
237 / 9e-70 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G118300
[exp]
1054 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1)
Potri.001G118200
[exp]
861 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1)
Potri.008G151900
[exp]
600 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1)
Potri.010G088800
[exp]
598 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1)
Potri.010G089050
[exp]
585 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1)
Potri.010G088900
[exp]
569 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1)
Potri.010G045600
[exp]
245 / 4e-70 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1)
Potri.012G084400
[exp]
239 / 7e-68 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1)
Potri.015G082900
[exp]
234 / 7e-66 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0103 Gal_mutarotase PF01179 Cu_amine_oxid Copper amine oxidase, enzyme domain
CL0047 CuAO_N2_N3 PF02728 Cu_amine_oxidN3 Copper amine oxidase, N3 domain
CL0047 CuAO_N2_N3 PF02727 Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence
>Lus10032209 pacid=23168488 polypeptide=Lus10032209 locus=Lus10032209.g ID=Lus10032209.BGIv1.0 annot-version=v1.0
ATGAAAGCAGCATCTGAGAATCAATCTCGTCTGCATCGAAGATCGAAATGGTTATCACTCGCGATTGAAGTCGGAACCACATCTCGTCTGGAGGCGCTGC
CAGCTCTGCTCAATCACTCACTTGAGTTCATCACAGCCATGGATCAACCATCTCACTTCTCCCGCTTTCTCTTCCTCCTACTCGCCGGCGGCACCCTACT
CGTCTTCACCTACTCCACTTACCCAACTTCCTTCCCGCCGACGACGACTTCTTCCCCTCACTTCTCCGCCTCAAATAATTCCTCCTCCAGAAAAGTAGCC
GGCATCCTCAAACAACCCTCCAAATCCCCCACCACCACCTCCTCCGCCACCTCCGCCACCCGCCGACGCCGTCATGAATCTGCCGTCCCCCATCACCCCC
TCGACCCCTTAACCATCCAGGAGCTCAACAAGGTCAGCCAAATCATCCACTCCCACGACCTCTTCAAACCCCCTACTTCCGTCGCCCTCCATACTGTCGT
CCTGGAAGAGCCGCCGAAGTCCGCCGTCCTCCGCTGGTCTCCCGGCGACCCCCTCCCGCTCCGAAAGGCCTTTGCTGTCGCACGTGTTGCTGCAACGGCG
TATCTACTGTCCGTTGACATCGCCGCCGGAGACCTCACGGCGACTCCGGCCACCGGCTCGGGATACCCGACAATGACGGTTGAGGACATGACGTCAGCAA
CGTGGGCCCCGTTCTCGAGCGTGGAGTTCAATCGGACGGTCGAGAATCGCGGGGTGGATATGGACGACGTGGCGTGCTTACCGATTTCTTCGGGTTGGTT
TGGTGAAAGAGAAGAGGGACGAAGGTTGATTAAGGTTCAATGCTACTCGATGAAAGGTACGGTTAACTTCTACATGAGGCCGATCGAAGGGCTGACAGTG
GTCGTCGATCTGGACACGAAAGAGGTTGTCTCGATAGTCGATATGGGGAAGCAGATCCCCATACCGAAGGCCGCCAACACAGACTATCGCTTTTCAGCGA
TCAATCAATGGTTGGATTTGGTGAATCCGATCTCCCTCGAACAGCCGAGGGGACCCACTTTCAAGGTGACCGACGGTCACTTTGTAAAATGGGCAAACTG
GGAATTTCACCTCAAACCTGACCCTAGGGCCGGGGTGATTGTGTCTCAGGCCAGGGTTAGGGATCCAGACACCGGGGTGATGAGGAGCGTGATGTACAAA
GGGTACACTTCTGAGCTTTTCGTGCCCTACATGGACCCCACAGACGCGTGGTACTTCAAGACGTACATGGATGCAGGTGAGTACGGGTTCGGGTTGAACT
CGATGTCGCTCGACCCGCTAAACGACTGCCCACGAAATGCACACTACATGGACGCGGTGTTCGTCACCGGGGACGGGAAACCATACATCCGGCCGAATAT
GGTGTGTATATTCGAGAGCTACGGCGGAGATATCGGGTGGCGACATTCCGAAAGTCCGATCACCGGCATGGGGATTATTGAAGTGAGACCAAAAGTGACA
CTTGTGGCTCGGATGGCAGCTTCAGTGGCTAATTACGATTACATCATCGATTGGGAATTTCAAACTGATGGCCTCATCCGAATTAAGGTAGGACTTAGCG
GGATTCTAATGGTGAAAGGAACGAACTATGCGAACAAAAATGAAGTCCCGGAGCACGAAAGCCTGTACGGCACGATGCTGTCGGAGAATGTGATCGGAGT
GATCCACGACCACTACGTCACTTTCTATCTGGACATGGACGTGGACGGAATCGACAACTCATTCGTCAACGTCCACATCAAGAAGGAGGAGACCTCGCCG
GAGGAGCATTCCCCGAGAAGGAGCTACCTCAAGGCAGTGCGGGAAGTGGCCAAGTCGGAGAAGGAGGCACAAATCAAGTTCCAGTTGTACAACCCATCTG
AGTTCCACGTGGTCAACCCAGGCAAGACAACCCGAGTTGGGAACCCGGTTGGGTATAAGGTGGTGGCTCAGGGTACCGCGGCGAGTCTGTTGGATCATTC
CGACCCGCCACAGATACGCGGCGCCTTTACGAATAACCAGATTTGGGTCACGCCGTATAACCGGTCAGAAGAGTGGGCCGGTGGGTTGTTTGATTATCAG
AATCAAGGGGAGGAGAATCTCCAAGTCTGGTCTGACAGGGATAGGCCAATAGAGAACAAAGACATAGTGGTGTGGTACACAATGGGATTCCACCACATTC
CATGTCAAGAAGATTTCCCAGTCATGCCTACAGTGTCGTCGAGCTTCGATCTCAAACCGGTCAATTTCTTTGAGAGGAATCCGATTCTTAGGATCTCTCC
CAATGTTGAGAAGGACTTGCCCGTTTGCAAGGCCACTTCTTCTGCTTGA
AA sequence
>Lus10032209 pacid=23168488 polypeptide=Lus10032209 locus=Lus10032209.g ID=Lus10032209.BGIv1.0 annot-version=v1.0
MKAASENQSRLHRRSKWLSLAIEVGTTSRLEALPALLNHSLEFITAMDQPSHFSRFLFLLLAGGTLLVFTYSTYPTSFPPTTTSSPHFSASNNSSSRKVA
GILKQPSKSPTTTSSATSATRRRRHESAVPHHPLDPLTIQELNKVSQIIHSHDLFKPPTSVALHTVVLEEPPKSAVLRWSPGDPLPLRKAFAVARVAATA
YLLSVDIAAGDLTATPATGSGYPTMTVEDMTSATWAPFSSVEFNRTVENRGVDMDDVACLPISSGWFGEREEGRRLIKVQCYSMKGTVNFYMRPIEGLTV
VVDLDTKEVVSIVDMGKQIPIPKAANTDYRFSAINQWLDLVNPISLEQPRGPTFKVTDGHFVKWANWEFHLKPDPRAGVIVSQARVRDPDTGVMRSVMYK
GYTSELFVPYMDPTDAWYFKTYMDAGEYGFGLNSMSLDPLNDCPRNAHYMDAVFVTGDGKPYIRPNMVCIFESYGGDIGWRHSESPITGMGIIEVRPKVT
LVARMAASVANYDYIIDWEFQTDGLIRIKVGLSGILMVKGTNYANKNEVPEHESLYGTMLSENVIGVIHDHYVTFYLDMDVDGIDNSFVNVHIKKEETSP
EEHSPRRSYLKAVREVAKSEKEAQIKFQLYNPSEFHVVNPGKTTRVGNPVGYKVVAQGTAASLLDHSDPPQIRGAFTNNQIWVTPYNRSEEWAGGLFDYQ
NQGEENLQVWSDRDRPIENKDIVVWYTMGFHHIPCQEDFPVMPTVSSSFDLKPVNFFERNPILRISPNVEKDLPVCKATSSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G12290 Copper amine oxidase family pr... Lus10032209
[exp]
0 1
AT1G20160 ATSBT5.2 Subtilisin-like serine endopep... Lus10034544
[exp]
49.1 0.6037

Lus10032209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.