Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12310 77 / 1e-16 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G12320 77 / 2e-16 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 76 / 3e-16 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT5G44620 67 / 3e-13 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12330 66 / 1e-12 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G22690 64 / 5e-12 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 64 / 5e-12 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT2G45560 54 / 2e-08 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33720 52 / 7e-08 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 52 / 7e-08 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024572 [exp] 106 / 3e-27 AT4G12320 345 / 1e-115 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024575 [exp] 77 / 2e-16 AT5G44620 267 / 2e-84 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) Lus10032214 [exp] 74 / 1e-15 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 74 / 2e-15 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 72 / 8e-15 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 72 / 9e-15 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 71 / 2e-14 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 71 / 2e-14 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024578 [exp] 71 / 2e-14 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114400 [exp] 87 / 7e-20 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 74 / 2e-15 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118400 [exp] 71 / 2e-14 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.005G045800 [exp] 71 / 3e-14 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.009G069100 [exp] 67 / 5e-13 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G274600 [exp] 67 / 6e-13 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.002G150300 [exp] 63 / 8e-12 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 62 / 2e-11 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 60 / 9e-11 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.012G137200 [exp] 60 / 1e-10 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032210 pacid=23168684 polypeptide=Lus10032210 locus=Lus10032210.g ID=Lus10032210.BGIv1.0 annot-version=v1.0 ATGACGTCACCTTCGCAAACCGGAACCCTAGCGTCGCCGCAAGAGCATTCTCGTACGGCGGGAGGGACATCGCCTTCTCGCCGTATGGGCCCGAGTGGCG GATGCTTAGGAAAGTGTTTTTCCGGAACATGCAGAGCAGGAAGGTTCTGGAAGCTTCTTTGTCGGATGAGGAAGGACGAGGTTATGAAAACGGTTACGGA GCTGTACGGCGGCGGTTGTGGCGGAAGGGTTGATGTTGGGGAGGTGGCGTTTAGGACGGTGATTGGTATGATATCAAGGATGTTCTGGGGTGGGACCCTT GATGATGACGTGCCGACGGCTGAAGTTGTCGGGAGGGAGTTCCGTTCCATGGCGGCGGAGCTTGTTGAGGTTCTTGGGCGGCCTAATGTGTCTGACGTTT TCCCGGTCCTCACAAGGGTCTGTGCGGGTTTGCCACTGGGTGAGAAGATGGTGATGTATGTATTGGCTACGCTTCTGCACATGTTTGATTGGAGAGTCCC CGAAGATGTGGTGGCTGATACGGAGGAGAAATTCGGGGTTGTGTTGGAGAAAGCTACTCCTTTGGTTTTGGTGACCACCCCTAGATAG
AA sequence Show only first row Show all	>Lus10032210 pacid=23168684 polypeptide=Lus10032210 locus=Lus10032210.g ID=Lus10032210.BGIv1.0 annot-version=v1.0 MTSPSQTGTLASPQEHSRTAGGTSPSRRMGPSGGCLGKCFSGTCRAGRFWKLLCRMRKDEVMKTVTELYGGGCGGRVDVGEVAFRTVIGMISRMFWGGTL DDDVPTAEVVGREFRSMAAELVEVLGRPNVSDVFPVLTRVCAGLPLGEKMVMYVLATLLHMFDWRVPEDVVADTEEKFGVVLEKATPLVLVTTPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	0	1
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	1.7	0.9809
AT1G15260			unknown protein		Lus10011448 [exp]	2.0	0.9711
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	3.2	0.9642
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	3.2	0.9788
					Lus10014719 [exp]	4.6	0.9765
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002545 [exp]	6.5	0.9347
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10035029 [exp]	7.7	0.9271
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	8.0	0.9540
AT5G50230			Transducin/WD40 repeat-like su...		Lus10015925 [exp]	8.8	0.9570
					Lus10010481 [exp]	9.2	0.9611

Compare expression of checked genes

Lus10032210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.