Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 395 / 9e-133 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 395 / 1e-132 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 355 / 2e-117 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 352 / 4e-116 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 345 / 3e-113 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 329 / 5e-107 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 327 / 5e-106 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 275 / 2e-86 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G04330 258 / 8e-80 Cytochrome P450 superfamily protein (.1) AT2G45560 243 / 5e-74 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024578 [exp] 739 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 736 / 0 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032213 [exp] 714 / 0 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 702 / 0 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 664 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 658 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 566 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024575 [exp] 551 / 0 AT5G44620 267 / 2e-84 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) Lus10024580 [exp] 475 / 1e-165 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 499 / 2e-173 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 436 / 1e-148 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 436 / 1e-148 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 407 / 1e-136 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.009G069100 [exp] 274 / 5e-86 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 266 / 6e-83 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 263 / 2e-81 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 258 / 8e-80 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.016G049800 [exp] 256 / 6e-79 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.007G016400 [exp] 254 / 2e-78 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032211 pacid=23168536 polypeptide=Lus10032211 locus=Lus10032211.g ID=Lus10032211.BGIv1.0 annot-version=v1.0 ATGGAGTCATGGTGGTGGAGGGATTCGCTCCTGGTGGCTTCTATCCTCGTTGTGGTATCAATACCGGTGTTATGGTTACTGCTGAAGAGAGCAGCCGACG AAACGTTGCCACCGGGTCCACGAGGGTTGCCAATAGTCGGGTACCTGCCATTTCTAAGCACACAACTCCACAAGAGCTTCGCAGAGCTGGCTCAACTCTA CGGCCCTGTCTACAAGCTATGGCTTGGATGCAAAATGTACGTGGTGATCGCCTCACCGTCACTAGCTAAGACAATTCGAGACCAGGTCATAACGTTTACA GATCGTGACCCGCTGCTTGCTTCTAAAATCATCAGCTATGATGGGAGTGACGTTGCCTTCTGCTCGTACAGTCCTGACTGGAGAAAAATGCGCAAGGTAT TCGTGCACGACCTGTTGAGCAGTTCGAGACTTGAAGGCTCGTACATGCTGAGGAAGAAGGAAGTCGAGAAGGGTGTTAAGGTTGTATACGATAAAAGAGG TAAAGCTTTGGACTTTGGCAAGTTGGCGTTTATGACAGTATCAAACACTGTCCTGAGCATGCTCTTGGGATGTACAGTCCACGAAGACGAAGGGGAGATG TTGTTTTCCAAGATTCGGGAACTGGCAGATGAGTTCCTGGTGCTACAGTCGACACTTAACATCTCGGATCTAATTCCTTCACTCGCTAGATTCGAGTTGC AGGGTTTGGAGATGAAAGCCAGGCAGGCGCGGCAGAGTTTCGACTCGATTCTCGGTTACATAATCGAGAAGTGGAGGAAGCTGGTTTCGGCTAGGGGAGG TGATGTCAAAGAGACAACAAAGGACTTCTTGCAGATTCTACTAGACCTAAACAGCAATGGAGATGCTGGTTCATCAATTACAGACGACCAACTCAAAGGG GTTCTTGTGGACGCGATTATCGGTGGAACAGACACGACATCAACGACGATAGAGTGGACGATGGCGATGCTGATGCAAAATCCAGATGTGATGGGAAAGG TCTACAAGGAACTAGATGAGGTAGTAGGAAGAAGCAACACTGTCGAAGAGTTACACCTGCCGAAGTTGCTCTATTTGGATGCAGCTATTAAGGAAACATT GCGCCTGCATCCAGCTGTGCCTATGCTGGCACTGCGTTGTCCATCCCAGGACTGCAAACTAGGCAAATACACCGTTCCGAAAGGCGTTACGGTAATCATT AACATGCATTCTATACACAGGGATCCAGAGGTCTGGACCAGTCCTCTGGAATTCGGACCTGAAAGGTTCCTAGACGAGTATGCAGCCAAATTCGATTACT TGGGCAACAGTTCTCAATATTTCCCATTTGGGACCGGGAGGAGGGTTTGTGCAGGGCTGCCAATGGCGGAGAAGATGCTGAAATACGTTCTGGCATCGTT GCTCCACTCGTTCGAGTGGAAACTCGCACTCGGGACAGAGGTGGATTCCACAGATAAATATGGAATCGTCTTGAGGCTAGAGAAACCGTTAATTCTTGTC CCTACGACAAGGTTAGCCAATCCAGATCTATACTAG
AA sequence Show only first row Show all	>Lus10032211 pacid=23168536 polypeptide=Lus10032211 locus=Lus10032211.g ID=Lus10032211.BGIv1.0 annot-version=v1.0 MESWWWRDSLLVASILVVVSIPVLWLLLKRAADETLPPGPRGLPIVGYLPFLSTQLHKSFAELAQLYGPVYKLWLGCKMYVVIASPSLAKTIRDQVITFT DRDPLLASKIISYDGSDVAFCSYSPDWRKMRKVFVHDLLSSSRLEGSYMLRKKEVEKGVKVVYDKRGKALDFGKLAFMTVSNTVLSMLLGCTVHEDEGEM LFSKIRELADEFLVLQSTLNISDLIPSLARFELQGLEMKARQARQSFDSILGYIIEKWRKLVSARGGDVKETTKDFLQILLDLNSNGDAGSSITDDQLKG VLVDAIIGGTDTTSTTIEWTMAMLMQNPDVMGKVYKELDEVVGRSNTVEELHLPKLLYLDAAIKETLRLHPAVPMLALRCPSQDCKLGKYTVPKGVTVII NMHSIHRDPEVWTSPLEFGPERFLDEYAAKFDYLGNSSQYFPFGTGRRVCAGLPMAEKMLKYVLASLLHSFEWKLALGTEVDSTDKYGIVLRLEKPLILV PTTRLANPDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032211 [exp]	0	1
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	5.5	0.8905
AT3G57440			unknown protein		Lus10042062 [exp]	7.5	0.9231
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10012154 [exp]	11.9	0.8939
					Lus10041024 [exp]	13.4	0.8981
AT2G04865			Aminotransferase-like, plant m...		Lus10003728 [exp]	18.1	0.8634
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	21.4	0.8922
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10042849 [exp]	22.2	0.8645
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	27.4	0.8879
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	27.5	0.8878
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	27.5	0.8579

Compare expression of checked genes

Lus10032211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.