Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 424 / 3e-144 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 416 / 3e-141 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT5G44620 369 / 1e-122 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12330 368 / 3e-122 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 367 / 7e-122 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G22710 347 / 6e-114 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 345 / 5e-113 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 283 / 3e-89 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G04330 263 / 8e-82 Cytochrome P450 superfamily protein (.1) AT3G61040 246 / 1e-75 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024577 [exp] 827 / 0 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 769 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 763 / 0 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 746 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032026 [exp] 687 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 676 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 582 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10035196 [exp] 488 / 2e-171 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 488 / 1e-170 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 497 / 9e-173 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G118500 [exp] 457 / 4e-157 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.003G114400 [exp] 441 / 9e-151 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 436 / 4e-148 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.013G073300 [exp] 268 / 9e-84 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G037201 [exp] 266 / 1e-82 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 265 / 1e-82 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.007G085000 [exp] 266 / 2e-82 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G058200 [exp] 263 / 8e-82 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.012G137200 [exp] 263 / 9e-82 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032213 pacid=23168483 polypeptide=Lus10032213 locus=Lus10032213.g ID=Lus10032213.BGIv1.0 annot-version=v1.0 ATGGATTTGCTCGTCGTGGTGGTTTCTATCCTCATCGTGGTATCGATCCCGATGTTATGGTCATTACTCAAGAGAGCAGCCGACGAAAAGTCGCCACCGG GTCCACGAGGGTTGCCTATAGTTGGCTACTTACCATTTCTCAGCACCCAACTCCACAAGAGCTTCGCGGAGCTGGCTGAACTCTACGGCCCTATCTACAA ACTATGGCTCGGAAGCAAAATGTACGTAGTGATCGCCTCGCCAAAACTGGCTAAACAAATCCGAGACCAGGTCGTAACGTTTACAGATCGCGACCCGGTC ATTGCTTCAAAGATCATCAGCTACGGTGGGAGTGATGTCGCTTTCTGCACAAACGGTCCTGACTGGAGAAAGCTGCGCAAGGTTTTCGTGCACGAATTGT TGAGCAGTTCGAGGCTCGAAAGCTCGTACGTGCTGAGAAAGAGGGAAATCGAAAAGGCTGTTAAGTATGTGTATGGAAAAAGAGGTAAAGCTTTGGACTT TGGCCGGTTGGTGTTTATGACAGTATCAAACACTGTCCTGAGCATGCTCTGGGGAAGCACTGTCTATGGAGAAGAGAGGAAGATGTTGTTTTCGGAGATA CGGAAATTGGCAGATGAATACAATGTGCTAATGTCATCACCAAACATCTCGGACCTGATTCCTGCACTAGCCAGATTTGACTTGCAGGGGATAGAGAGGA GAACCAGAGAGGCACAGCAGAGTTTCGATCAGATTCTGAGTTTCATAATCAATGAGAGGAGGAAGCTGGGAAGTGAAGCGAACGAGACAAAGGACTTCAT GCAGATTCTACTAGACCTAAACAGCAATGGAGATGCTGCTGCTTCAGTTACAGACGACCAACTCAAAGGGATTCTTGTGGACGTTATTATCGGAGGAACA GACACAACATCAACGACAATAGAGTGGACAATGGCAATGCTGATGCAACATCCAGATGCAATGCAAAAGATCTACAAGGAACTAGATGAGGTAGTAGGAA GAAGCAACACTGTCGAGGAGTTGCATCTGCCGAAGCTACACTACTTGGACGCAGCTGTTAAGGAATCGCTCCGCCTGCATCCGGCAGTGCCTATGCTGGC ACTACGTTGCCAATCTCAGGACTACAAACTAGGGAAATACATCGTTCCCAAAGGAGTCACAGTCATCGTCAACACCTACGCAATCCAAAGGGATCCACAG CTCTGGACCAGTCCGCTAGAATTCAGACCCGAAAGGTTCCTAGACATGAATGTTACAGCCAAGTTCGATTACTTGGGCAGCAGTTCGCAATATTTCCCGT TTGGGACAGGGAGAAGGGTCTGCGCAGGGCTTCCAATGGCGGAGAAGATGCTGAAGAACGTTCTGGCATTGTTGCTCCACTCGTTCGAATGGAGACTGGC ACAGGGGACAAAGGTGGATTCGACAGAAAAGTTTGGAATTGTTTTCAAGTTAGCGAAACCATTAATTCTTGTCCCTATACCGAAGTTAGCCAATCCAGAT CTGTACTAA
AA sequence Show only first row Show all	>Lus10032213 pacid=23168483 polypeptide=Lus10032213 locus=Lus10032213.g ID=Lus10032213.BGIv1.0 annot-version=v1.0 MDLLVVVVSILIVVSIPMLWSLLKRAADEKSPPGPRGLPIVGYLPFLSTQLHKSFAELAELYGPIYKLWLGSKMYVVIASPKLAKQIRDQVVTFTDRDPV IASKIISYGGSDVAFCTNGPDWRKLRKVFVHELLSSSRLESSYVLRKREIEKAVKYVYGKRGKALDFGRLVFMTVSNTVLSMLWGSTVYGEERKMLFSEI RKLADEYNVLMSSPNISDLIPALARFDLQGIERRTREAQQSFDQILSFIINERRKLGSEANETKDFMQILLDLNSNGDAAASVTDDQLKGILVDVIIGGT DTTSTTIEWTMAMLMQHPDAMQKIYKELDEVVGRSNTVEELHLPKLHYLDAAVKESLRLHPAVPMLALRCQSQDYKLGKYIVPKGVTVIVNTYAIQRDPQ LWTSPLEFRPERFLDMNVTAKFDYLGSSSQYFPFGTGRRVCAGLPMAEKMLKNVLALLLHSFEWRLAQGTKVDSTEKFGIVFKLAKPLILVPIPKLANPD LY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	0	1
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	3.0	0.9168
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	4.2	0.8811
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	4.9	0.8756
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	4.9	0.8897
					Lus10037540 [exp]	6.3	0.8803
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	9.6	0.8809
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	14.0	0.8608
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	17.9	0.8493
AT3G52740			unknown protein		Lus10014197 [exp]	19.0	0.8626
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	19.0	0.8644

Compare expression of checked genes

Lus10032213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.