Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 397 / 2e-133 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 390 / 1e-130 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12330 366 / 2e-121 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT5G44620 354 / 1e-116 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12310 353 / 3e-116 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G22710 340 / 6e-111 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 338 / 5e-110 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 291 / 4e-92 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G04330 263 / 2e-81 Cytochrome P450 superfamily protein (.1) AT2G45560 244 / 2e-74 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024578 [exp] 888 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032213 [exp] 749 / 0 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 747 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 732 / 0 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 708 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 696 / 0 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 619 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 509 / 1e-178 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) Lus10035196 [exp] 503 / 9e-177 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 531 / 0 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 446 / 4e-152 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 434 / 5e-148 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 420 / 1e-141 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.012G137200 [exp] 280 / 5e-88 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G085000 [exp] 278 / 9e-87 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 276 / 9e-87 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G084700 [exp] 275 / 4e-86 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G069100 [exp] 275 / 6e-86 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 271 / 2e-84 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032214 pacid=23168543 polypeptide=Lus10032214 locus=Lus10032214.g ID=Lus10032214.BGIv1.0 annot-version=v1.0 ATGTCTCGCTTGCAGAATATAACATTACCTCATTCCCCGATAATAGAGTCATGGTGGTCGGAAACGAGTAGCGACGATTCGCAACTAGGTGAACTCGTCG TGATAGCTCTCATTGTGGCATTAATCCCGGTGTTATGGTTATTACCCAAGAGAGCAGCCAACGAGAAGTTGCCACCAGGTCCACGAGGGTTACCAATAGT TGGCTACCTGCCGTTTCTTAGCACCGAACTCCACAAGAGCTTCACAGAGCTGGCAGGAGTCTATGGCCCTGTCTACAAGCTCTGGCTCGGAAGCAAAATG TACGTGGTGATTGGCTCACCAACACTAGCTAAACAAGTTCGAGAGCAGGTCGTAACGTTTGCAGATCGTGACCCGCTGATTGCTTCCAAAATCATCAGCT ATGGTGGGAATGACATTGCTTTCTGCTCACACAGTCCTGACTGGAGAAAGCTGCGCAAGACATTCGTTCGCGAACTTTTGTGCAGTACAAGACTTGAAAG TTCCTATGTGCTGAGAGAGAGGGAAGTTCAGAAAACTGTTAAGGATGTTTACCAGAAAAAAGGTAAAGCTTTGGACTTTGGTCAGTTGGTGTTTATGACA GTATCAAACACTGTCCTCAGCATGCTCTTGGGATGCACTGTCCATGGAGGCGAAGGGATGATCTTCTTTTCGAAGATTCGGAAATTGATGGATGAATTCA ATGTGCTACAGTCAACACCAAACATCTCAGACCTAATTCCTGCACTTGCCAGATTTGACCTGCAGGGGATAGAGAGGAAAACCAGGCAGGGACAGCAGAG TTTCGATCGAATTCTCGATTCGATAATCAATGAGAGGAGGAAGCTGGGAGGAGAAATGATAGAAACAAAGGACTTCTTGCAGATTCTACTAGACCTAAAC AGCAGTGTAGATGCTGCTTCATCAATTACAGACGACCAACTCAAAGGGATTCTTGTGGATACGATTATAGGTGGAACAGACACAACAGCAACGACGATAG AGTGGATGATGGCAATGCTGATGCGGCATCAAGACGCAATGCAAAAGATCAACAAAGAACTAGATGAGGTAGTAGGGAGAAGCAATACTGTTGAAGAGTT GCATCTGCCGAAGCTAAGCTACTTGGACGCAGTCGTTAAGGAAACATTACGCCTGCATCCAGCGGTGCCTATGCTTGCCATGCGTTGCCCAACCCAGGAC TGCAAACTAAGCGAATACACCATTCCAAAAGGCGTTACATTCATCATTAACGCCTATGCAATCCACAGGGATCCACAGCTCTGGACCAGTCCTCTGGAAT TCCGACCTAACAGGTTCCTAGACAAGAATGCAGCCAAGTTCGATTACTTGGGGAACAGTGACCGGTATTTCCCGTTTGGGACAGGAAGGAGGGTCTGTGC AGGGCTTCCAATGGCAGACAAGATGCTGAAATACGTACTGGCATCGTTACTCCACTCGTTCGAATGGAGACTAGCACACGGCACAGAGGTGGATTCAACA GACAAGTTTGGAATTGTTTTGAAGTTAGACAAACCGTTGATTCTTGTCCCTACACCAAAGCTAGCCAATCCAGATCTTCACTAG
AA sequence Show only first row Show all	>Lus10032214 pacid=23168543 polypeptide=Lus10032214 locus=Lus10032214.g ID=Lus10032214.BGIv1.0 annot-version=v1.0 MSRLQNITLPHSPIIESWWSETSSDDSQLGELVVIALIVALIPVLWLLPKRAANEKLPPGPRGLPIVGYLPFLSTELHKSFTELAGVYGPVYKLWLGSKM YVVIGSPTLAKQVREQVVTFADRDPLIASKIISYGGNDIAFCSHSPDWRKLRKTFVRELLCSTRLESSYVLREREVQKTVKDVYQKKGKALDFGQLVFMT VSNTVLSMLLGCTVHGGEGMIFFSKIRKLMDEFNVLQSTPNISDLIPALARFDLQGIERKTRQGQQSFDRILDSIINERRKLGGEMIETKDFLQILLDLN SSVDAASSITDDQLKGILVDTIIGGTDTTATTIEWMMAMLMRHQDAMQKINKELDEVVGRSNTVEELHLPKLSYLDAVVKETLRLHPAVPMLAMRCPTQD CKLSEYTIPKGVTFIINAYAIHRDPQLWTSPLEFRPNRFLDKNAAKFDYLGNSDRYFPFGTGRRVCAGLPMADKMLKYVLASLLHSFEWRLAHGTEVDST DKFGIVLKLDKPLILVPTPKLANPDLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	0	1
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10042436 [exp]	1.0	0.9410
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	3.9	0.8984
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	6.6	0.8989
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10027842 [exp]	8.7	0.8210
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Lus10016878 [exp]	9.8	0.8323
					Lus10011314 [exp]	10.0	0.8772
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	10.7	0.8349
AT5G01660			unknown protein		Lus10002863 [exp]	11.2	0.8430
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	11.4	0.8610
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	12.2	0.8606

Compare expression of checked genes

Lus10032214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.