Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 425 / 5e-144 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 421 / 2e-142 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 381 / 8e-127 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 379 / 6e-126 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 365 / 1e-120 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 349 / 2e-114 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 347 / 3e-113 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 299 / 4e-95 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45560 263 / 2e-81 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G37340 247 / 2e-75 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032026 [exp] 818 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 735 / 0 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 692 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 683 / 0 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 661 / 0 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 657 / 0 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032213 [exp] 655 / 0 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024580 [exp] 644 / 0 AT4G12310 344 / 2e-114 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) Lus10035196 [exp] 587 / 0 AT4G12300 308 / 7e-101 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118400 [exp] 520 / 0 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 456 / 6e-156 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 455 / 1e-155 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 432 / 6e-146 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 286 / 2e-90 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.007G084200 [exp] 283 / 3e-89 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.013G073300 [exp] 284 / 4e-89 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 283 / 1e-88 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084700 [exp] 278 / 3e-87 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.005G037100 [exp] 269 / 2e-83 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032215 pacid=23168628 polypeptide=Lus10032215 locus=Lus10032215.g ID=Lus10032215.BGIv1.0 annot-version=v1.0 ATGGAGCTCATCCGCCTACGGTCATGGTGGAGCAGCGATTCAAGAGCTGCCATAGTGGCAGCTCTCGCCGCAGCATTGATCATGGCGATATGGTTACTCA AGAGAGCATCCAACAAAACATCATTGCCACCGGGTCCCCGTGGGTTGCCAATAGTAGGGTACCTGCCATTTCTAAGCACCCATCTCCACAAGAGCTTCAC AGAGCTGGCCGAAACCTACGGCCCTATCTACAAGCTCTGGCTAGGGTACAAGATGTACGTGGTGGTCGGCTCACCGTCGCTAGCTAAAGAAGTTCGCGAC CAGGACGTAACATTTTCAGCTCGAGATCCACCGATTGCTGCGAAGATAATCACCCACGGTGGGAATGACATCGGGTTCACATCCTACGGTTCCGACTGGA AGAAGCTAAGGAAGATCTTCGTGCGTGAGTTGTTAAGCAATGCCAGGATGGACGGTTCTTACTTGCTGAGGAAGCAACAAGTTCAGAGGGTTGTTAAGGA TGTGTATGAGAAAAGAGGTAAAGGTTTGGACTTTGGCCAGTTGGTGTTCATGACGGTATCAAACACTGTCTTGAGCATGCTCTGGGGAAGTACGATCCAT GGGGAAGAAGACGAGATGTTCTTTGCCAAAATTAAGAAGTTGGCAGGTGAGCAGATGATGCTATTTGCTGCACCGAACATCTCAGACTTCGTTCCGGGAC TTGCCAGGTTTGACTTGCAGGGGATAGAGAAGAGATCCAGGAAGCTGCAACAGGAATCGGATCGAATTCTCGATTCTGTCATCAGCGAGCGGAGGAGGCT GGTTTCGGATTTGGGAGGTGAATTCAAAGATGGGAAGGATTTCTTGCAGATTCTCCTGGATCTCAACAGCCATGGAGGAGATGCTGCATTGTCAATCACA GACAGTCAACTCAAGGGCATTCTGCTGACAACTAACGTAAAGACCATTAAGCATGATGGCACATCAGCATACAACCACTACGCAAAACTCAGTGCTGCCC ATATTTTACAGGATACGATTATCGGCGGAACAGACACAACAGTAACAACGATAGAGTGGACAATGGCAATGCTGATGCAACATCCAGACGCAATGCAAAA GATCTACAAGGAACTAGACGAGGTAGTAGGAAGAAAAAGTGTAGTCGAAGAGTTACATCTGCAGCAACTACACTACTTGGATCTTGTGATTAAGGAAACA TTCCGCCTGCATCCGGCACTGCCGATGCTGATTCCACGTTGCCCCAGCCAGGACTGCAAACTAGGGGGGTACACCATTCCAAAGGGCGTCACTGTATTCA TCAACGCTTATGCAATCCACAGGGATCCAAAGCTCTGGACCAACCCTCTGGAATTCAGACCTGAAAGGTTCCTAGACGAGAATAATGCAAGCAAGTTGGA CTACTTGGGGAACAGTTCAAAGTATTTCCCATTTGGAATGGGAAGGAGAGTCTGTGCAGGGCTTCCAATGGCGGAAAAGATGCTGAAATACGTTCTGGCA TCGTTACTCCACTCGTTTGAATGGAAGCTAGCACAGGGGACAGAGGTGGATTTGACGGATAAGTTTGGGATTGTCGTGAGGTTGGAGAAACCGCTAATTC TTGTCCCTACACCAAAGCTGGCCAATCCAGATCTTTACTAG
AA sequence Show only first row Show all	>Lus10032215 pacid=23168628 polypeptide=Lus10032215 locus=Lus10032215.g ID=Lus10032215.BGIv1.0 annot-version=v1.0 MELIRLRSWWSSDSRAAIVAALAAALIMAIWLLKRASNKTSLPPGPRGLPIVGYLPFLSTHLHKSFTELAETYGPIYKLWLGYKMYVVVGSPSLAKEVRD QDVTFSARDPPIAAKIITHGGNDIGFTSYGSDWKKLRKIFVRELLSNARMDGSYLLRKQQVQRVVKDVYEKRGKGLDFGQLVFMTVSNTVLSMLWGSTIH GEEDEMFFAKIKKLAGEQMMLFAAPNISDFVPGLARFDLQGIEKRSRKLQQESDRILDSVISERRRLVSDLGGEFKDGKDFLQILLDLNSHGGDAALSIT DSQLKGILLTTNVKTIKHDGTSAYNHYAKLSAAHILQDTIIGGTDTTVTTIEWTMAMLMQHPDAMQKIYKELDEVVGRKSVVEELHLQQLHYLDLVIKET FRLHPALPMLIPRCPSQDCKLGGYTIPKGVTVFINAYAIHRDPKLWTNPLEFRPERFLDENNASKLDYLGNSSKYFPFGMGRRVCAGLPMAEKMLKYVLA SLLHSFEWKLAQGTEVDLTDKFGIVVRLEKPLILVPTPKLANPDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032215 [exp]	0	1
AT5G55980			serine-rich protein-related (....		Lus10043215 [exp]	5.5	0.7515
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011288 [exp]	13.3	0.7787
					Lus10023333 [exp]	17.1	0.7175
					Lus10011452 [exp]	25.1	0.7191
					Lus10018224 [exp]	35.1	0.7057
					Lus10004849 [exp]	41.3	0.6965
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	44.4	0.7146
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	46.8	0.6903
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029054 [exp]	64.8	0.6785
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10011738 [exp]	68.4	0.6456

Compare expression of checked genes

Lus10032215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.